Gene detail

Detail information of GWHGAAZE027313

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04490.1	3.3772E-170	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FGK3\|MO25N_ARATH	4E-163	Putative MO25-like protein At5g47540
trEMBL	tr\|A0A068U7F7\|A0A068U7F7_COFCA	1E-170	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04490.1}
TAIR10	AT5G47540.1	6E-131	Mo25 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17545896	17549731	+
GWHAAZE00000008	mRNA	17545896	17549731	+
GWHAAZE00000008	exon	17545896	17546093	+
GWHAAZE00000008	exon	17546397	17546558	+
GWHAAZE00000008	exon	17546669	17546787	+
GWHAAZE00000008	exon	17547509	17547583	+
GWHAAZE00000008	exon	17547741	17547837	+
GWHAAZE00000008	exon	17548605	17548673	+
GWHAAZE00000008	exon	17548934	17549032	+
GWHAAZE00000008	exon	17549295	17549339	+
GWHAAZE00000008	exon	17549451	17549553	+
GWHAAZE00000008	exon	17549661	17549731	+
GWHAAZE00000008	CDS	17545896	17546093	+
GWHAAZE00000008	CDS	17546397	17546558	+
GWHAAZE00000008	CDS	17546669	17546787	+
GWHAAZE00000008	CDS	17547509	17547583	+
GWHAAZE00000008	CDS	17547741	17547837	+
GWHAAZE00000008	CDS	17548605	17548673	+
GWHAAZE00000008	CDS	17548934	17549032	+
GWHAAZE00000008	CDS	17549295	17549339	+
GWHAAZE00000008	CDS	17549451	17549553	+
GWHAAZE00000008	CDS	17549661	17549731	+

Transcript Sequence
>GWHTAAZE027347 ATGGAGAAGTCAGATAGAATTAGGCCGAGATCATCGTGTTTCAAAAAGGTCTTAATCGGCGTACTCCATAAAAGTGCCGTCAAAGGCCTCTTCAAGTCCAAACCCCGTTCGCCAGCCGACCTCGTCCGGCAAACTCGGTCTCTTCTCCTCTTTCTCGATTCTGGTGTCAACCCTGTTGGCTCCAAGCGTAATGAAAAGACTGTAGAATTAAATAAACTCTTGTGGGAGTTGAAGTCAATTCTTTATGGGACTAGTGAGTGTGAACCTGCTGCTGAAGCTTGCGCCCAATTGACTCAGGAGTTCTTCAGGGAGAACACACTGCATCTCCTCGTTGTTTTTCTTCCGAAGCTAAACCTTGAGGCCCGCAAAGATGCCACCCAGGTTGTCGCAAATTTGCAAAGGCAACCAGTGCAATCAAGGTTCATTGCTTCTGATTACTTGGCAGCCAATTTAGATCTCATGGATCTTTTGGTATCGGGGTATGACAATCCAGACATTGCTTTGCATTTTGGTGGAATGTTAAGGGAGTGCATTCGTCATCAATGTGCTGCTAGGTATATTTTGGAGTCGGAGCAGCACATGAAGAAGTTTTTTGATTACATACAACTCCCAAATTTTGATGTTGCAGCAGATGCTGCAGCTACATTTAAGTTTTTTTCAGAATTCAACTCAAAGCTCCTCGAATCTGAAAACTACATCACCAGAAGACAAGCCATCAAGATACTGGGGCATATGTTGCTTGATCGTTCAAATTCTGGCGTGATGATACGATACGTGAGTTCAATGGACAACATGAGGATTTTAATGAATCTTCTAAGGGAATCAAGCAAGAACATCCAGTTAGATGCATTTCATGTGTTCAAGCTATTTGTGGCTAACCAAGATAAGCCTGCTGACATCGTGAACATACTCGTAGCAAATAGGAGCAAGCTTATACGCTTATTTAGCGCCTTCACGGTTGACGGAGAGGATGAGCAATTTGAGGTGGATAAAGTTCAAGTTATAAGAGAAATTACTGAACTGGAAGCGAAGATTTGA

Network for GWHGAAZE027313

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0201

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08569.12	Mo25	30	217	5.70E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08272	CAB39, MO25	AMPK signaling pathway	map04152
K08272	CAB39, MO25	mTOR signaling pathway	map04150

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.494
	SRR3591706	second leaf	2.709
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	3.564
	SRR3591709	Stem	1.590
	SRR3591710	White floral bud	6.265
	SRR3591711	White flower	3.868
	SRR3591712	Green floral bud	6.082
	SRR3591713	Yellow flower	0.818
SRP173429	SRR8316895	Juvenile bud stage	4.528
	SRR8316896	Juvenile bud stage	4.458
	SRR8316897	Juvenile bud stage	1.788
	SRR8316894	Third green stage	3.468
	SRR8316900	Third green stage	9.817
	SRR8316901	Third green stage	8.806
	SRR8316898	Complete white stage	0.289
	SRR8316899	Complete white stage	5.680
	SRR8316903	Complete white stage	0.902
	SRR8316902	Silver flowering stage	0.953
	SRR8316904	Silver flowering stage	0.932
	SRR8316905	Silver flowering stage	0.235
	SRR8316906	Gold flowering stage	0.643
	SRR8316907	Gold flowering stage	1.661
	SRR8316908	Gold flowering stage	0.304
SRP132670	SRR6706286	Control	3.709
	SRR6706287	Light intensity 50%	4.526
	SRR6706288	Light intensity 20%	6.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.506
	CNS0095593	Slightly white alabastrum(diploid) 2	7.136
	CNS0095594	Slightly white alabastrum(diploid) 3	5.870
	CNS0095595	Whole white alabastrum(diploid) 2	8.917
	CNS0095596	Whole white alabastrum(diploid) 3	10.025
	CNS0095597	Whole white alabastrum(diploid) 4	10.277
	CNS0095598	Silvery flower (diploied) 1	3.718
	CNS0095599	Silvery flower (diploied) 2	4.813
	CNS0095600	Silvery flower (diploied) 3	2.322
	CNS0095601	Golden flower (diploid) 1	3.993
	CNS0095602	Golden flower (diploid) 2	3.524
	CNS0095603	Golden flower (diploid) 3	3.797
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.004
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.655
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.755
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.182
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.311
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.335
	CNS0095610	Silvery flower (tetraploid) 1	1.254
	CNS0095611	Silvery flower (tetraploid) 2	3.056
	CNS0095612	Silvery flower (tetraploid) 3	1.906
	CNS0095613	Golden flower (tetraploid) 1	0.438
	CNS0095614	Golden flower (tetraploid) 2	0.347
	CNS0095615	Golden flower (tetraploid) 3	1.270
CRA001975	CRR073297	Stem 1	3.605
	CRR073298	Stem 2	4.981
	CRR073299	Stem 3	3.313
	CRR073300	Leaf 1	7.221
	CRR073301	Leaf 2	5.618
	CRR073302	Leaf 3	5.753
	CRR073303	Juvenile bud 1	4.989
	CRR073304	Juvenile bud 2	5.296
	CRR073305	Juvenile bud 3	3.400
	CRR073306	Third green 1	2.244
	CRR073307	Third green 2	2.945
	CRR073308	Third green 3	2.389
	CRR073309	Second white 1	0.212
	CRR073310	Second white 2	1.370
	CRR073311	Second white 3	0.342
	CRR073312	Silver flowering 1	2.521
	CRR073313	Silver flowering 2	0.481
	CRR073314	Silver flowering 3	0.739
	CRR073315	Gold flowering 1	1.180
	CRR073316	Gold flowering 2	1.854
	CRR073317	Gold flowering 3	0.684
	CRR073318	Tawny withering 1	3.225
	CRR073319	Tawny withering 2	2.578
	CRR073320	Tawny withering 3	4.954