Detail information of GWHGAAZE027316


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006352533.10PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum]
COGYP_003709088.12E-11RNA-binding protein
Swissprottr|Q8W034|RNP1_ARATH5E-71Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|M1B537|M1B537_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400037271}
TAIR10AT3G07810.12E-104RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1758119417582815-
GWHAAZE00000008mRNA1758119417582815-
GWHAAZE00000008exon1758119417582297-
GWHAAZE00000008exon1758254017582815-
GWHAAZE00000008CDS1758254017582815-
GWHAAZE00000008CDS1758119417582297-
Transcript Sequence

Network for GWHGAAZE027316

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_126873.10E-13
PF00076.23RRM_11271805.60E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.227
SRR3591706second leaf1.181
SRR3591707mature leaf3.013
SRR3591708Shoot apex1.721
SRR3591709Stem7.811
SRR3591710White floral bud34.555
SRR3591711White flower6.367
SRR3591712Green floral bud29.189
SRR3591713Yellow flower2.616
SRP173429 SRR8316895Juvenile bud stage 4.558
SRR8316896Juvenile bud stage 4.112
SRR8316897Juvenile bud stage 1.870
SRR8316894Third green stage 3.975
SRR8316900Third green stage 21.826
SRR8316901Third green stage 18.285
SRR8316898Complete white stage 8.572
SRR8316899Complete white stage 19.889
SRR8316903Complete white stage 11.443
SRR8316902Silver flowering stage5.487
SRR8316904Silver flowering stage9.881
SRR8316905Silver flowering stage4.082
SRR8316906Gold flowering stage 12.235
SRR8316907Gold flowering stage 7.329
SRR8316908Gold flowering stage 8.852
SRP132670SRR6706286Control15.799
SRR6706287Light intensity 50%16.683
SRR6706288Light intensity 20%16.353
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.921
CNS0095593Slightly white alabastrum(diploid) 214.328
CNS0095594Slightly white alabastrum(diploid) 311.012
CNS0095595Whole white alabastrum(diploid) 229.990
CNS0095596Whole white alabastrum(diploid) 334.536
CNS0095597Whole white alabastrum(diploid) 440.886
CNS0095598Silvery flower (diploied) 17.514
CNS0095599Silvery flower (diploied) 24.655
CNS0095600Silvery flower (diploied) 311.900
CNS0095601Golden flower (diploid) 13.143
CNS0095602Golden flower (diploid) 25.769
CNS0095603Golden flower (diploid) 36.581
CNS0095604Slightly white alabastrum(tetraploid) 115.585
CNS0095605Slightly white alabastrum(tetraploid) 216.802
CNS0095606Slightly white alabastrum(tetraploid) 318.091
CNS0095607Whole white alabastrum(tetraploid) 134.161
CNS0095608Whole white alabastrum(tetraploid) 244.637
CNS0095609Whole white alabastrum(tetraploid) 326.648
CNS0095610Silvery flower (tetraploid) 18.993
CNS0095611Silvery flower (tetraploid) 210.327
CNS0095612Silvery flower (tetraploid) 317.311
CNS0095613Golden flower (tetraploid) 13.680
CNS0095614Golden flower (tetraploid) 27.312
CNS0095615Golden flower (tetraploid) 36.712
CRA001975CRR073297Stem 112.483
CRR073298Stem 213.577
CRR073299Stem 310.521
CRR073300Leaf 129.387
CRR073301Leaf 220.635
CRR073302Leaf 317.555
CRR073303Juvenile bud 127.314
CRR073304Juvenile bud 224.570
CRR073305Juvenile bud 321.946
CRR073306Third green 129.241
CRR073307Third green 229.121
CRR073308Third green 324.194
CRR073309Second white 110.242
CRR073310Second white 210.193
CRR073311Second white 37.395
CRR073312Silver flowering 18.836
CRR073313Silver flowering 27.767
CRR073314Silver flowering 32.927
CRR073315Gold flowering 14.770
CRR073316Gold flowering 23.353
CRR073317Gold flowering 34.040
CRR073318Tawny withering 110.345
CRR073319Tawny withering 25.435
CRR073320Tawny withering 310.601