Gene detail

Detail information of GWHGAAZE027322

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004244065.2	0	PREDICTED: LOW QUALITY PROTEIN: serine acetyltransferase 1, chloroplastic-like [Solanum lycopersicum]
COG	YP_001980889.1	2E-90	serine acetyltransferase
Swissprot	tr\|Q42588\|SAT1_ARATH	5E-151	Serine acetyltransferase 1, chloroplastic
trEMBL	tr\|A0A068V1J5\|A0A068V1J5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13733.1}
TAIR10	AT1G55920.1	3E-121	serine acetyltransferase 2;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	17727423	17728436	-
GWHAAZE00000008	mRNA	17727423	17728436	-
GWHAAZE00000008	exon	17727423	17728436	-
GWHAAZE00000008	CDS	17727423	17728436	-

Transcript Sequence
>GWHTAAZE027356 ATGGCCGCCTGTATTCACACTTCAAGGACACAAACCAACCCACTTTCTCACGATCCAAACAGGCCCCAAATCGACGACGATGTCTACAATTGCGTCCAATTCTGCAGACCCAATTTTCCTGACCTAGTTTCTTGCGTACCCATAAGTCAAAATCCAAAAATCAATCACAGACGTACGATCGACGAAACCATCACAAATCAAGAAGATGATCTATGGCTAAAAATGAAATATCAAGCCCAATTAGATTCCAAGCAAGAACCCATTTTGTCAAATTATTTTTTAGATACAATCCTATCCCATGATACCCTAGAGAGTGCTCTAGCCAATCATCTCTCCATAAAATTGGGCAATTCGAGCCTTCCTAGTGGTACACTCTTTGATGTCTTCGTGGGCGTGCTTGCAGGGGATCAAGAAATCATAGCTGCAGTACAAGAAGATTTGAGGGCAGTGAAAGAGAGGGACCCAGCATGTGTGAGTCACGTGCACGGATTCTTGAACTTCAAAGGCTTTCTTGCAATTCAAGCTCATAGAGTGGCACACAAATTATGGTCACAAGGAAGAAAAATCCTAGCACTAATAATACAAAATAGGGTATCTGAGGTTTTTGCAGTGGACATACACCCCGGAGCGAAGATCGGCCGGGGAATATTGCTGGACCATGCAACCGGAGTGGTGGTCGGAGAGACGGCGGTGATCGGAGATAATGTGTCAATTTTACATAATGTGACGTTGGGTGGGACTGGTAAGGCTAGTGGGGATAGACACCCAAAAATTGGAGATGGGGTGTTGATAGGGGCAGGGACTTGTGTATTGGGGAGTGTTAGGATTGGGGATGGGGCTAAAGTAGGGGCAGGGTCAGTGGTGTTAAAGGAGGTGCCAAATAGGACTACTGCAGTGGGGAATCCAGCTAGATTGATTGGGGGAAAGGAAAATCCAATGAAGCTTGATAAGATTCCCAGTCTTACAATGGACCATACTTCACATATTTCTGAGTGGTCTGATTATGTTATTTAG

Network for GWHGAAZE027322

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06426.15	SATase_N	71	175	5.90E-33
PF00132.25	Hexapep	210	246	0.002
PF00132.25	Hexapep	255	289	4.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00640	cysE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270
		Biofilm formation - Vibrio cholerae	map05111

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0005737	cellular_component	cytoplasm
GO:0009001	molecular_function	serine O-acetyltransferase activity
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.858
	SRR3591706	second leaf	15.532
	SRR3591707	mature leaf	41.328
	SRR3591708	Shoot apex	6.638
	SRR3591709	Stem	26.464
	SRR3591710	White floral bud	9.823
	SRR3591711	White flower	12.682
	SRR3591712	Green floral bud	13.260
	SRR3591713	Yellow flower	9.716
SRP173429	SRR8316895	Juvenile bud stage	5.162
	SRR8316896	Juvenile bud stage	12.629
	SRR8316897	Juvenile bud stage	4.994
	SRR8316894	Third green stage	4.447
	SRR8316900	Third green stage	20.396
	SRR8316901	Third green stage	11.796
	SRR8316898	Complete white stage	1.559
	SRR8316899	Complete white stage	8.595
	SRR8316903	Complete white stage	4.047
	SRR8316902	Silver flowering stage	3.703
	SRR8316904	Silver flowering stage	3.934
	SRR8316905	Silver flowering stage	1.599
	SRR8316906	Gold flowering stage	5.084
	SRR8316907	Gold flowering stage	4.594
	SRR8316908	Gold flowering stage	5.781
SRP132670	SRR6706286	Control	23.405
	SRR6706287	Light intensity 50%	19.916
	SRR6706288	Light intensity 20%	20.833
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.523
	CNS0095593	Slightly white alabastrum(diploid) 2	9.323
	CNS0095594	Slightly white alabastrum(diploid) 3	6.685
	CNS0095595	Whole white alabastrum(diploid) 2	6.625
	CNS0095596	Whole white alabastrum(diploid) 3	9.591
	CNS0095597	Whole white alabastrum(diploid) 4	4.792
	CNS0095598	Silvery flower (diploied) 1	7.358
	CNS0095599	Silvery flower (diploied) 2	8.236
	CNS0095600	Silvery flower (diploied) 3	7.476
	CNS0095601	Golden flower (diploid) 1	11.014
	CNS0095602	Golden flower (diploid) 2	8.060
	CNS0095603	Golden flower (diploid) 3	7.441
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.577
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.345
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.416
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.643
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.146
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.213
	CNS0095610	Silvery flower (tetraploid) 1	6.164
	CNS0095611	Silvery flower (tetraploid) 2	6.106
	CNS0095612	Silvery flower (tetraploid) 3	7.470
	CNS0095613	Golden flower (tetraploid) 1	8.078
	CNS0095614	Golden flower (tetraploid) 2	7.500
	CNS0095615	Golden flower (tetraploid) 3	7.993
CRA001975	CRR073297	Stem 1	7.631
	CRR073298	Stem 2	10.297
	CRR073299	Stem 3	12.586
	CRR073300	Leaf 1	9.400
	CRR073301	Leaf 2	11.680
	CRR073302	Leaf 3	10.353
	CRR073303	Juvenile bud 1	10.707
	CRR073304	Juvenile bud 2	8.068
	CRR073305	Juvenile bud 3	14.617
	CRR073306	Third green 1	9.786
	CRR073307	Third green 2	8.618
	CRR073308	Third green 3	8.005
	CRR073309	Second white 1	9.774
	CRR073310	Second white 2	9.761
	CRR073311	Second white 3	10.813
	CRR073312	Silver flowering 1	10.376
	CRR073313	Silver flowering 2	8.171
	CRR073314	Silver flowering 3	7.427
	CRR073315	Gold flowering 1	15.348
	CRR073316	Gold flowering 2	16.267
	CRR073317	Gold flowering 3	11.997
	CRR073318	Tawny withering 1	11.344
	CRR073319	Tawny withering 2	8.376
	CRR073320	Tawny withering 3	9.272