Gene detail

Detail information of GWHGAAZE027348

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAY87903.1	0	farnesyl diphosphate synthase [Panax ginseng]
COG	YP_004736392.1	7E-21	bifunctional short chain isoprenyl diphosphate synthase
Swissprot	tr\|P49351\|FPPS1_LUPAL	0	Farnesyl pyrophosphate synthase 1
trEMBL	tr\|Q4JHN6\|Q4JHN6_PANGI	0	Farnesyl diphosphate synthase {ECO:0000313\|EMBL:AAY87903.1}
TAIR10	AT5G47770.1	1E-137	farnesyl diphosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18059660	18062213	+
GWHAAZE00000008	mRNA	18059660	18062213	+
GWHAAZE00000008	exon	18059660	18059770	+
GWHAAZE00000008	exon	18059868	18059954	+
GWHAAZE00000008	exon	18060067	18060183	+
GWHAAZE00000008	exon	18060273	18060361	+
GWHAAZE00000008	exon	18060458	18060509	+
GWHAAZE00000008	exon	18061010	18061105	+
GWHAAZE00000008	exon	18061319	18061363	+
GWHAAZE00000008	exon	18061462	18061551	+
GWHAAZE00000008	exon	18061628	18061699	+
GWHAAZE00000008	exon	18062085	18062213	+
GWHAAZE00000008	CDS	18059660	18059770	+
GWHAAZE00000008	CDS	18059868	18059954	+
GWHAAZE00000008	CDS	18060067	18060183	+
GWHAAZE00000008	CDS	18060273	18060361	+
GWHAAZE00000008	CDS	18060458	18060509	+
GWHAAZE00000008	CDS	18061010	18061105	+
GWHAAZE00000008	CDS	18061319	18061363	+
GWHAAZE00000008	CDS	18061462	18061551	+
GWHAAZE00000008	CDS	18061628	18061699	+
GWHAAZE00000008	CDS	18062085	18062213	+

Transcript Sequence
>GWHTAAZE027382 AAGCTGAATCGGGGACTCTCTGTTATTGACAGCTTCAAGTTGCTGAAAGAAGGAAAAGAACTAGAGGATGAAGTATTTCTGGCATGTGTGCTTGGTTGGTGCATTGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATTATGGATAACTCTCATACACGCCGAGGTCAACCCTGCTGGTTCAGATTACCCAAGGTTGGTATGATTGCTGCAAATGATGGCTTAATACTTCGCAACCATATCCCAAGAATCCTGAAAAAGCATTTCCGAGAAAAGCCTTATTATGTGGACCTGCTCGATCTATTTAACGAGGTAGAATTCCAGACTGCATCTGGACAGATGATAGATTTGATTACCACACTTGCAGGAGAGAAGGATCTATCAAAGTACTCATTACCTATTCATCGTCGAATTGTTCAGTACAAAACTGCTTATTACTCATTTTATCTTCCAGTCGCTTGTGCACTTCTTATGGCTGGTGAAAACTTGGATAATCACAATGATGTGAAGGACATACTTATTGAAATGGGAACCTATTTTCAAGTACAGGATGATTATCTGGATTGTTTCGGTGAACCCGAGGTGATTGGTAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCCTGGTTGGTTGTGAAAGCACTGGAACTTTGTGACGAGGAACAAAAGAAAATATTATATGAGAGCTATGGAAAGGAGGATCCAAACTGTGTTGCAAAAGTGAAGGAGCTTTATAAAACTCTCAATCTCGAGGGTGTATTTGCAGAGTACGAGAGAAAGAGTAATGAGAAGTTAGTAGAATTCATTGAAGCTCATCCAAGCAAACCAATAAAAGCAGTGTTGAAATCCTTCCTGGCAAAGATATACAAGAGGCAGAAGTAG

Network for GWHGAAZE027348

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00348.18	polyprenyl_synt	1	249	9.30E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00787	FDPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.401
	SRR3591706	second leaf	31.189
	SRR3591707	mature leaf	33.758
	SRR3591708	Shoot apex	56.499
	SRR3591709	Stem	55.031
	SRR3591710	White floral bud	21.562
	SRR3591711	White flower	36.673
	SRR3591712	Green floral bud	38.500
	SRR3591713	Yellow flower	33.808
SRP173429	SRR8316895	Juvenile bud stage	47.566
	SRR8316896	Juvenile bud stage	63.980
	SRR8316897	Juvenile bud stage	28.025
	SRR8316894	Third green stage	20.756
	SRR8316900	Third green stage	49.976
	SRR8316901	Third green stage	47.023
	SRR8316898	Complete white stage	11.251
	SRR8316899	Complete white stage	75.296
	SRR8316903	Complete white stage	23.017
	SRR8316902	Silver flowering stage	8.505
	SRR8316904	Silver flowering stage	13.948
	SRR8316905	Silver flowering stage	6.372
	SRR8316906	Gold flowering stage	24.250
	SRR8316907	Gold flowering stage	27.933
	SRR8316908	Gold flowering stage	24.315
SRP132670	SRR6706286	Control	11.957
	SRR6706287	Light intensity 50%	13.188
	SRR6706288	Light intensity 20%	15.366
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.591
	CNS0095593	Slightly white alabastrum(diploid) 2	53.671
	CNS0095594	Slightly white alabastrum(diploid) 3	52.480
	CNS0095595	Whole white alabastrum(diploid) 2	40.207
	CNS0095596	Whole white alabastrum(diploid) 3	35.943
	CNS0095597	Whole white alabastrum(diploid) 4	31.460
	CNS0095598	Silvery flower (diploied) 1	47.044
	CNS0095599	Silvery flower (diploied) 2	45.891
	CNS0095600	Silvery flower (diploied) 3	33.233
	CNS0095601	Golden flower (diploid) 1	41.308
	CNS0095602	Golden flower (diploid) 2	33.335
	CNS0095603	Golden flower (diploid) 3	35.554
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.488
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.591
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.788
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.045
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.101
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.515
	CNS0095610	Silvery flower (tetraploid) 1	35.567
	CNS0095611	Silvery flower (tetraploid) 2	41.051
	CNS0095612	Silvery flower (tetraploid) 3	31.267
	CNS0095613	Golden flower (tetraploid) 1	26.391
	CNS0095614	Golden flower (tetraploid) 2	31.796
	CNS0095615	Golden flower (tetraploid) 3	12.492
CRA001975	CRR073297	Stem 1	26.765
	CRR073298	Stem 2	29.700
	CRR073299	Stem 3	27.120
	CRR073300	Leaf 1	24.175
	CRR073301	Leaf 2	21.208
	CRR073302	Leaf 3	17.669
	CRR073303	Juvenile bud 1	19.414
	CRR073304	Juvenile bud 2	16.496
	CRR073305	Juvenile bud 3	16.824
	CRR073306	Third green 1	1.134
	CRR073307	Third green 2	0.533
	CRR073308	Third green 3	1.840
	CRR073309	Second white 1	7.027
	CRR073310	Second white 2	7.719
	CRR073311	Second white 3	4.482
	CRR073312	Silver flowering 1	2.206
	CRR073313	Silver flowering 2	3.744
	CRR073314	Silver flowering 3	3.854
	CRR073315	Gold flowering 1	22.315
	CRR073316	Gold flowering 2	32.543
	CRR073317	Gold flowering 3	15.475
	CRR073318	Tawny withering 1	30.052
	CRR073319	Tawny withering 2	24.592
	CRR073320	Tawny withering 3	20.326