Gene detail

Detail information of GWHGAAZE027355

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009630343.1	0	PREDICTED: cytochrome c oxidase assembly protein COX15 [Nicotiana tomentosiformis]
COG	YP_004695545.1	4E-90	Heme A synthase
Swissprot	tr\|Q9FKT8\|COX15_ARATH	0	Cytochrome c oxidase assembly protein COX15
trEMBL	tr\|A0A068UZZ3\|A0A068UZZ3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_77 {ECO:0000313\|EMBL:CDP13819.1}
TAIR10	AT5G56090.1	6E-180	cytochrome c oxidase 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18203144	18205946	+
GWHAAZE00000008	mRNA	18203144	18205946	+
GWHAAZE00000008	exon	18203144	18203469	+
GWHAAZE00000008	exon	18204454	18204679	+
GWHAAZE00000008	exon	18204774	18205019	+
GWHAAZE00000008	exon	18205132	18205242	+
GWHAAZE00000008	exon	18205507	18205638	+
GWHAAZE00000008	exon	18205776	18205946	+
GWHAAZE00000008	CDS	18203144	18203469	+
GWHAAZE00000008	CDS	18204454	18204679	+
GWHAAZE00000008	CDS	18204774	18205019	+
GWHAAZE00000008	CDS	18205132	18205242	+
GWHAAZE00000008	CDS	18205507	18205638	+
GWHAAZE00000008	CDS	18205776	18205946	+

Transcript Sequence
>GWHTAAZE027389 ACAGACTTATTATGCTGTTTGCAGGGTTTTTATAAACCATCTTTTAGGAATATGTCCACCATAGCAGCATCTGCCAGTAAAGAAAGCAACGAGGGTTTGAAGCTCCTCGTTACTGCTGGACCCCGTGCTCAGAAAATGGTTGGGATATGGCTGTTTGCATCTGCTGCATGGGTGTTTAGCATGGTGATACTTGGTGGTGTTACACGTCTGACTCGGTCCGGTCTTTCAATGACAGACTGGAAATTTACCGGTGGACTTCCTCCTCTATCAGATGAAGATTGGTTGATTGAATTTGTGAAGTACCAGCAATCCCCTGAGTTCAAGCGTGTAAACAAAGGGATGAGTATTGATGATTTTAAGTTCATATATTGGATGGAATATGCCCACCGTATGTGGGGAAGGGCACTTGGTATCATGTTTGTGTTGCCATTTTCATATTTTCTTCGGAAGGGATATATTACTCTACAACTTGGGGTTAGACTCTCTGTCCTATTTGGTCTTGGTGCTGGACAAGGTTTAATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCGCCATCGGAGTATGTTCAACCCAGAGTAAGCCCTTACCGTCTTGCAGCTCATCTCACTTCGGCATTTCTTATTTACTGTGGGCTCTTTTGGACTGCTCTTTCTGTTGTTATGCCGGAACCTCCTGCTGAATCAGTAGCTTGGGTTCATGGAGCTGCAAAAGTTAAGAGACTTGCTCTTCCTGTAAGCATTATTGTAGGCATCACCGCCATCTCAGGAGCCTTTGTTGCGGGAAATGACGCTGGCCATGCATTTAATACTTTCCCCAAGATGGGCAATTCATGGATTCCTGATGATATTTTTAGTATGAAGCCACTTTTGTGCAACTTCTTTGAGAATACGTCTACAGTGCAGCTTGACCATCGTATTCTTGCAACTGCGACATTAGCTTCAATTGGTGGCTTATGGTGGTCGACGAGAAAGCTGGACATACATCCTGCAATACGGTCTTTGATTGGAAGCACGATGGGCATGGCTGCTCTTCAGGTGACTTTGGGGATATCAACTCTTCTATCATATGTACCTGTTTCACTAGGCACTGCTCACCAGGCTGGAGCTTTAACTCTTTTAACACTTATGATCCTGCTCAATCACACTGTCCGGAGACCATCATTGTCGCTCCTCAAGTCACTGCCTCCAGTTACAAAGACAACCTGA

Network for GWHGAAZE027355

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02628.16	COX15-CtaA	49	379	2.60E-110

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02259	COX15, ctaA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Oxidative phosphorylation	map00190
		Porphyrin and chlorophyll metabolism	map00860
		Two-component system	map02020
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006784	biological_process	heme A biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016021	cellular_component	integral component of membrane
GO:0016020	cellular_component	membrane
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.678
	SRR3591706	second leaf	1.766
	SRR3591707	mature leaf	4.790
	SRR3591708	Shoot apex	5.022
	SRR3591709	Stem	8.165
	SRR3591710	White floral bud	9.274
	SRR3591711	White flower	14.357
	SRR3591712	Green floral bud	10.054
	SRR3591713	Yellow flower	7.006
SRP173429	SRR8316895	Juvenile bud stage	7.341
	SRR8316896	Juvenile bud stage	13.627
	SRR8316897	Juvenile bud stage	4.996
	SRR8316894	Third green stage	4.733
	SRR8316900	Third green stage	17.128
	SRR8316901	Third green stage	15.936
	SRR8316898	Complete white stage	6.182
	SRR8316899	Complete white stage	13.713
	SRR8316903	Complete white stage	7.278
	SRR8316902	Silver flowering stage	11.121
	SRR8316904	Silver flowering stage	9.864
	SRR8316905	Silver flowering stage	5.032
	SRR8316906	Gold flowering stage	17.759
	SRR8316907	Gold flowering stage	21.089
	SRR8316908	Gold flowering stage	15.551
SRP132670	SRR6706286	Control	8.828
	SRR6706287	Light intensity 50%	8.869
	SRR6706288	Light intensity 20%	10.764
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.214
	CNS0095593	Slightly white alabastrum(diploid) 2	12.044
	CNS0095594	Slightly white alabastrum(diploid) 3	13.496
	CNS0095595	Whole white alabastrum(diploid) 2	11.421
	CNS0095596	Whole white alabastrum(diploid) 3	13.248
	CNS0095597	Whole white alabastrum(diploid) 4	10.695
	CNS0095598	Silvery flower (diploied) 1	4.961
	CNS0095599	Silvery flower (diploied) 2	5.244
	CNS0095600	Silvery flower (diploied) 3	12.075
	CNS0095601	Golden flower (diploid) 1	2.723
	CNS0095602	Golden flower (diploid) 2	8.357
	CNS0095603	Golden flower (diploid) 3	7.199
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.341
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.157
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.471
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.966
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.854
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.759
	CNS0095610	Silvery flower (tetraploid) 1	11.326
	CNS0095611	Silvery flower (tetraploid) 2	7.553
	CNS0095612	Silvery flower (tetraploid) 3	12.345
	CNS0095613	Golden flower (tetraploid) 1	3.892
	CNS0095614	Golden flower (tetraploid) 2	5.977
	CNS0095615	Golden flower (tetraploid) 3	4.417
CRA001975	CRR073297	Stem 1	9.885
	CRR073298	Stem 2	8.662
	CRR073299	Stem 3	8.787
	CRR073300	Leaf 1	10.872
	CRR073301	Leaf 2	14.328
	CRR073302	Leaf 3	12.527
	CRR073303	Juvenile bud 1	16.201
	CRR073304	Juvenile bud 2	10.152
	CRR073305	Juvenile bud 3	11.923
	CRR073306	Third green 1	7.814
	CRR073307	Third green 2	6.312
	CRR073308	Third green 3	7.597
	CRR073309	Second white 1	14.762
	CRR073310	Second white 2	15.509
	CRR073311	Second white 3	10.706
	CRR073312	Silver flowering 1	6.892
	CRR073313	Silver flowering 2	11.104
	CRR073314	Silver flowering 3	6.695
	CRR073315	Gold flowering 1	10.912
	CRR073316	Gold flowering 2	19.789
	CRR073317	Gold flowering 3	8.239
	CRR073318	Tawny withering 1	12.824
	CRR073319	Tawny withering 2	10.907
	CRR073320	Tawny withering 3	12.891