Gene detail

Detail information of GWHGAAZE027358

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI39810.3	2.4603E-176	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q50EX6\|ODO1_PETHY	2E-59	Protein ODORANT1
trEMBL	tr\|D7UAP5\|D7UAP5_VITVI	9E-177	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39810.3}
TAIR10	AT5G56110.1	1E-91	myb domain protein 103

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18215867	18217005	+
GWHAAZE00000008	mRNA	18215867	18217005	+
GWHAAZE00000008	exon	18215867	18215999	+
GWHAAZE00000008	exon	18216092	18216221	+
GWHAAZE00000008	exon	18216348	18217005	+
GWHAAZE00000008	CDS	18215867	18215999	+
GWHAAZE00000008	CDS	18216092	18216221	+
GWHAAZE00000008	CDS	18216348	18217005	+

Transcript Sequence
>GWHTAAZE027392 ATGGGCCGAATTCCATGTTGCGAGAAGGATAATGTGAAGAGGGGACAGTGGACCCCTGAAGAAGACAACAAGCTTTCTTCCTATATTGCTCAACACGGCACCCGCAACTGGCGCCTTATCCCCAAGAATGCAGGGCTCCAGAGATGCGGGAAGAGTTGTAGGCTACGCTGGACTAACTACCTTCGCCCTGACCTAAAGCACGGCCAATTCTCTGATGCTGAAGAACAAACCATTGTCAAGCTTCATTCTGTTGTTGGCAACCGATGGTCGATAATAGCTGCACAGCTACCTGGGCGAACCGACAATGACGTAAAAAATCACTGGAACACAAAGGTGAAAAAGAAGCTTTCGGGCATGGGAATCGATCCAGTCACCCACAAGCCCTTTTCCCACCTGATGGCCGAGATAGCAACTACACTGGCCCCACCACAGGTAGCCAATCTAACCGAAGCAGCCCTTGGTTGTTTCAAGGATGAAATGCTCCACCTCCTTACCAAGAAACACATTGACTTCCAGCTCCAGCAATCAGGTCCCACCCACAACATTAACGCGTATCAAAAAGACGATATGATTGAGAGGATCAAACTGAGAACTATGATACAAGAACCCAACATGGTGGTACCTTTAAACAACAAGCATTGGGACTCAATTGGCGGGTGCAGTAGTGGTTTTCATTATGGGAGTTTGTCTTTTGGGAACGAAGAGGATGGGTCTCCTTGGAACCAGAGCATGTGTACTGGGAGTACGTGCACAGCAGGTGAGCAACAAGGTCAGTTGCATATTAATGAAAAGCTTACGGATGAAAACGGAGAGGAGTCTGTGGGTGGAAAAGAAACCTGCAGAGATGGGTCAAATATTTTCAATTCAGATTGTGTGTTGTGGGATCTACCCTCTGAGGATTTGATGAATCCTCTTGTTTGA

Network for GWHGAAZE027358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	1.50E-15
PF00249.32	Myb_DNA-binding	68	110	4.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.675
	SRR3591706	second leaf	4.089
	SRR3591707	mature leaf	8.754
	SRR3591708	Shoot apex	12.563
	SRR3591709	Stem	25.401
	SRR3591710	White floral bud	6.633
	SRR3591711	White flower	8.445
	SRR3591712	Green floral bud	5.909
	SRR3591713	Yellow flower	8.111
SRP173429	SRR8316895	Juvenile bud stage	9.304
	SRR8316896	Juvenile bud stage	12.985
	SRR8316897	Juvenile bud stage	4.522
	SRR8316894	Third green stage	4.192
	SRR8316900	Third green stage	9.189
	SRR8316901	Third green stage	10.181
	SRR8316898	Complete white stage	2.609
	SRR8316899	Complete white stage	12.018
	SRR8316903	Complete white stage	5.881
	SRR8316902	Silver flowering stage	5.427
	SRR8316904	Silver flowering stage	3.605
	SRR8316905	Silver flowering stage	1.498
	SRR8316906	Gold flowering stage	7.866
	SRR8316907	Gold flowering stage	9.645
	SRR8316908	Gold flowering stage	9.377
SRP132670	SRR6706286	Control	7.472
	SRR6706287	Light intensity 50%	7.590
	SRR6706288	Light intensity 20%	10.005
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.413
	CNS0095593	Slightly white alabastrum(diploid) 2	13.110
	CNS0095594	Slightly white alabastrum(diploid) 3	12.618
	CNS0095595	Whole white alabastrum(diploid) 2	10.111
	CNS0095596	Whole white alabastrum(diploid) 3	5.251
	CNS0095597	Whole white alabastrum(diploid) 4	9.985
	CNS0095598	Silvery flower (diploied) 1	13.456
	CNS0095599	Silvery flower (diploied) 2	11.878
	CNS0095600	Silvery flower (diploied) 3	5.389
	CNS0095601	Golden flower (diploid) 1	13.139
	CNS0095602	Golden flower (diploid) 2	8.505
	CNS0095603	Golden flower (diploid) 3	7.210
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.723
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.457
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.266
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.841
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.371
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.474
	CNS0095610	Silvery flower (tetraploid) 1	10.605
	CNS0095611	Silvery flower (tetraploid) 2	6.332
	CNS0095612	Silvery flower (tetraploid) 3	4.538
	CNS0095613	Golden flower (tetraploid) 1	6.880
	CNS0095614	Golden flower (tetraploid) 2	8.603
	CNS0095615	Golden flower (tetraploid) 3	5.193
CRA001975	CRR073297	Stem 1	16.354
	CRR073298	Stem 2	13.647
	CRR073299	Stem 3	2.309
	CRR073300	Leaf 1	15.903
	CRR073301	Leaf 2	17.517
	CRR073302	Leaf 3	1.412
	CRR073303	Juvenile bud 1	1.809
	CRR073304	Juvenile bud 2	0.381
	CRR073305	Juvenile bud 3	1.961
	CRR073306	Third green 1	0.148
	CRR073307	Third green 2	0.043
	CRR073308	Third green 3	0.317
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.092
	CRR073311	Second white 3	0.312
	CRR073312	Silver flowering 1	0.137
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.237
	CRR073316	Gold flowering 2	1.915
	CRR073317	Gold flowering 3	0.534
	CRR073318	Tawny withering 1	5.499
	CRR073319	Tawny withering 2	13.011
	CRR073320	Tawny withering 3	4.782