Detail information of GWHGAAZE027360


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKCW68335.10hypothetical protein EUGRSUZ_F01999 [Eucalyptus grandis]
COGYP_007092635.12E-29WD-40 repeat-containing protein
Swissprottr|Q9FKT5|THOC3_ARATH0THO complex subunit 3
trEMBLtr|A0A059BRQ3|A0A059BRQ3_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW68335.1}
TAIR10AT5G56130.12E-153Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1822185918224744-
GWHAAZE00000008mRNA1822185918224744-
GWHAAZE00000008exon1822185918222140-
GWHAAZE00000008exon1822259218222670-
GWHAAZE00000008exon1822282018222906-
GWHAAZE00000008exon1822322318223322-
GWHAAZE00000008exon1822342218223479-
GWHAAZE00000008exon1822377818223846-
GWHAAZE00000008exon1822402818224119-
GWHAAZE00000008exon1822427718224406-
GWHAAZE00000008exon1822464918224744-
GWHAAZE00000008CDS1822464918224744-
GWHAAZE00000008CDS1822427718224406-
GWHAAZE00000008CDS1822402818224119-
GWHAAZE00000008CDS1822377818223846-
GWHAAZE00000008CDS1822342218223479-
GWHAAZE00000008CDS1822322318223322-
GWHAAZE00000008CDS1822282018222906-
GWHAAZE00000008CDS1822259218222670-
GWHAAZE00000008CDS1822185918222140-
Transcript Sequence

Network for GWHGAAZE027360

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401250.057
PF00400.33WD4039732.90E-05
PF00400.33WD401641970.011
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K12880THOC3 Spliceosome map03040
RNA transportmap03013

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.005
SRR3591706second leaf25.160
SRR3591707mature leaf20.155
SRR3591708Shoot apex43.317
SRR3591709Stem35.560
SRR3591710White floral bud28.369
SRR3591711White flower32.277
SRR3591712Green floral bud27.538
SRR3591713Yellow flower34.213
SRP173429 SRR8316895Juvenile bud stage 26.690
SRR8316896Juvenile bud stage 39.754
SRR8316897Juvenile bud stage 16.387
SRR8316894Third green stage 17.290
SRR8316900Third green stage 40.807
SRR8316901Third green stage 41.162
SRR8316898Complete white stage 15.530
SRR8316899Complete white stage 52.739
SRR8316903Complete white stage 22.564
SRR8316902Silver flowering stage12.725
SRR8316904Silver flowering stage19.001
SRR8316905Silver flowering stage6.943
SRR8316906Gold flowering stage 26.844
SRR8316907Gold flowering stage 27.500
SRR8316908Gold flowering stage 23.239
SRP132670SRR6706286Control35.029
SRR6706287Light intensity 50%41.502
SRR6706288Light intensity 20%44.244
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.996
CNS0095593Slightly white alabastrum(diploid) 231.510
CNS0095594Slightly white alabastrum(diploid) 329.166
CNS0095595Whole white alabastrum(diploid) 224.356
CNS0095596Whole white alabastrum(diploid) 328.453
CNS0095597Whole white alabastrum(diploid) 425.679
CNS0095598Silvery flower (diploied) 129.339
CNS0095599Silvery flower (diploied) 226.854
CNS0095600Silvery flower (diploied) 328.003
CNS0095601Golden flower (diploid) 130.181
CNS0095602Golden flower (diploid) 224.929
CNS0095603Golden flower (diploid) 324.876
CNS0095604Slightly white alabastrum(tetraploid) 133.159
CNS0095605Slightly white alabastrum(tetraploid) 231.215
CNS0095606Slightly white alabastrum(tetraploid) 343.225
CNS0095607Whole white alabastrum(tetraploid) 123.971
CNS0095608Whole white alabastrum(tetraploid) 220.096
CNS0095609Whole white alabastrum(tetraploid) 328.805
CNS0095610Silvery flower (tetraploid) 134.444
CNS0095611Silvery flower (tetraploid) 231.880
CNS0095612Silvery flower (tetraploid) 325.771
CNS0095613Golden flower (tetraploid) 124.523
CNS0095614Golden flower (tetraploid) 227.643
CNS0095615Golden flower (tetraploid) 321.719
CRA001975CRR073297Stem 141.404
CRR073298Stem 235.717
CRR073299Stem 333.332
CRR073300Leaf 134.489
CRR073301Leaf 235.658
CRR073302Leaf 332.309
CRR073303Juvenile bud 137.561
CRR073304Juvenile bud 226.565
CRR073305Juvenile bud 335.668
CRR073306Third green 16.158
CRR073307Third green 28.080
CRR073308Third green 38.262
CRR073309Second white 111.263
CRR073310Second white 212.555
CRR073311Second white 311.147
CRR073312Silver flowering 17.116
CRR073313Silver flowering 28.302
CRR073314Silver flowering 38.225
CRR073315Gold flowering 120.426
CRR073316Gold flowering 224.750
CRR073317Gold flowering 313.728
CRR073318Tawny withering 123.890
CRR073319Tawny withering 221.907
CRR073320Tawny withering 324.058