Gene detail

Detail information of GWHGAAZE027375

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEQ29020.1	0	WRKY7 [Panax quinquefolius]
Swissprot	tr\|Q9FG77\|WRKY2_ARATH	1E-179	Probable WRKY transcription factor 2
trEMBL	tr\|K4ENK0\|K4ENK0_PANQU	0	WRKY7 {ECO:0000313\|EMBL:AEQ29020.1}
TAIR10	AT5G56270.1	6E-142	WRKY DNA-binding protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18441435	18444808	-
GWHAAZE00000008	mRNA	18441435	18444808	-
GWHAAZE00000008	exon	18441435	18442014	-
GWHAAZE00000008	exon	18442476	18442634	-
GWHAAZE00000008	exon	18442750	18443603	-
GWHAAZE00000008	exon	18443804	18443992	-
GWHAAZE00000008	exon	18444344	18444808	-
GWHAAZE00000008	CDS	18444344	18444808	-
GWHAAZE00000008	CDS	18443804	18443992	-
GWHAAZE00000008	CDS	18442750	18443603	-
GWHAAZE00000008	CDS	18442476	18442634	-
GWHAAZE00000008	CDS	18441435	18442014	-

Transcript Sequence
>GWHTAAZE027409 ATGGGTGGATTTGATGACCATGTTGGTATAATTGGAGACTGGATGCCTCCTAGTCCTAGCCCGAGGGCTTTTTTCTCAGCAATGTTGGGTGATGATATTGGCTTAAGGTCAATTTCTGAACCTACAGGTGAAAACAAAAATGATGATGAAATCTTTCATGGCACTGAACAACATCGAAGTTCAGCAAATAATGATGATGAAAACGAGTACAGGGCACGAGCTGGAGGTCAAGCAACTAAACCAGTTGCATTTTCTGAGCAGAAAATGGGTCCGCGAGGAGGTGGAGGTCTTTTGGAAAGGATGGCAGCCAGAGCTGGTTTTAATGCTCCCAGGTTAAATACTGAAAGCATTAGACCTCCTGGTCTTTTGCAGAACCCTGAAATTCGTTCTCCTTACTTGACAATTCCCCCTGGTCTCAGTCCAACAACGTTGCTAGATTCTCCTGTTTTTCTCTCAAATTCACTGGTGCAGCCCTCCCCAACAACAGGAAAGTTCTCATTTCCCCAGAGTGGCAATGGTAGAAGCTCCATGTTTATGAGGGAAGGCCCTGATAAGAATAAAGATAATTTCTTTGAGAGTTTCACATCTTCGTCCTTCGCGTTCAAGCCTGTTGCAGAATCCACTCCCTCACTTTTCCTTGGTGCAGCAAGCAAAGCAACTTCTTCGACTCTTCCTCAGCAATCTTTTCCAAGTATTGAGGTTTCAGTTCAGTCAGATAACTCCTGTCTGCCTTGTAATTTAGAACCTGTCAAAGCTCACTCTCAAAATGGAACCTCCCTCCATCTTCACGCTGACTTTTCCCGATCAGCTGCTGAAAAAGATAGCGGGGCTACTAATATCTCATCAGAACCCAGGGCCATTGATCGTGTTGCTGGCAGTGCAGAACATTCTCCACCTCTTGCTGACCAACAAGAGGAGGATCCAGATCAAAGGGTCAGTGGAGATAATAATGTTGGTAGTGCCCCATCTGAGGACGAGTATAATTGGAGGAAATATGGTCAAAAACAAGTAAAGGGCAGTGAGTATCCACGAAGTTATTACAAGTGCACCCACCCGAATTGCCCGGTCAAGAAGAAGGTGGAGCGATCTCATGAAGGTCACATTACAGAGATTATCTACAAGGGGATCCATAATCACCCAAAACCTCCACCCAATCGCAGATCAACCATCGGATCCTCAAACACCCTTAGTGACATGCAATTTGACATTGCGGACCAATGTGGGCCAGGTGCTGACGGTGGTGATCAGGTTTGGACAACCATGCAAAAGGGAACCGCTGATTGGAGGCAGGACAATGTTGAGGTGACATCATCTGGACCATTGGGCCCTGAATCCTGCAATGCAACTAACAATTTGCAGGTTCAGAATGGTGCTCAATTTGAATTGGGTGATGCAGTGGATCGATCTTCTACTTTTTCAAATGAGGAAGATGAAGATGACCGTGCAACACACGGCAGCGTTTCATTAGGCTATGATGGTGAAGGAGACGAATCTGAGTCAAAACGAAGGAAAGTTGAAGCTTATGCAGCAGATGTGAGTGGGGCCACCAGAGCCATCAGAGAACCTAGAGTGGTGGTACAAACAACCAGTGAGGTAGACATTCTTGATGATGGGTATCGCTGGCGCAAGTACGGTCAGAAAGTTGTGAAAGGCAATCCAAATCCAAGGAGTTATTACAAGTGCACAAATGCAGGCTGCTCCGTAAGGAAGCACGTGGAAAGGGCATCACATGATCTCAAGTCAGTGATCACGACATACGAGGGGAAGCACAATCACGATGTTCCGGCTGCTCGCAACAGCAGCCACGTTAACTCTGGGGTATCTTCACAAGGTGGTGGTGGTCAAAGCCAAGTTCACAGGCCTGAGCCGTCTCAAGTTCAGAACAGCATGGCGAGGTTTGAAAGGCCCCATTCGCTTGCTTCATTTGGTCTACCTGGAATGAACAGGCAGCAGTTAGTGGGAGGTGGTTCGCATGGCTTTGCTTTTGGAATGAACCAACAGGGGGGGCTGGCCAACCTGGCAATGGCCGGGTTCGGCCCTAACCAAGGGAAGATGCCTACTTCTGCAATGCCCCTTCATCATCCGTATCTAGGACAGCCGCCCAGGCCAATGAACGAAATGGGCTTCATGTTGCCGAAAGGAGAACCCAAGGTGGAGCCCATGTCCGAACCCGGGTTGAATCTCACCAATGGCTCCTCAGTTTATCACCAAATTATGAGTAGGTTACCCCTTGGGCCTCAGATGTAA

Network for GWHGAAZE027375

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	324	380	3.50E-24
PF03106.16	WRKY	536	593	2.50E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
K18835	WRKY2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.481
	SRR3591706	second leaf	13.456
	SRR3591707	mature leaf	16.715
	SRR3591708	Shoot apex	21.359
	SRR3591709	Stem	61.847
	SRR3591710	White floral bud	19.839
	SRR3591711	White flower	21.336
	SRR3591712	Green floral bud	13.865
	SRR3591713	Yellow flower	14.372
SRP173429	SRR8316895	Juvenile bud stage	12.301
	SRR8316896	Juvenile bud stage	13.693
	SRR8316897	Juvenile bud stage	6.797
	SRR8316894	Third green stage	4.533
	SRR8316900	Third green stage	9.794
	SRR8316901	Third green stage	10.451
	SRR8316898	Complete white stage	4.980
	SRR8316899	Complete white stage	12.659
	SRR8316903	Complete white stage	7.749
	SRR8316902	Silver flowering stage	7.346
	SRR8316904	Silver flowering stage	7.210
	SRR8316905	Silver flowering stage	3.478
	SRR8316906	Gold flowering stage	12.408
	SRR8316907	Gold flowering stage	17.006
	SRR8316908	Gold flowering stage	15.258
SRP132670	SRR6706286	Control	9.631
	SRR6706287	Light intensity 50%	10.025
	SRR6706288	Light intensity 20%	8.902
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.449
	CNS0095593	Slightly white alabastrum(diploid) 2	12.527
	CNS0095594	Slightly white alabastrum(diploid) 3	12.299
	CNS0095595	Whole white alabastrum(diploid) 2	12.975
	CNS0095596	Whole white alabastrum(diploid) 3	7.782
	CNS0095597	Whole white alabastrum(diploid) 4	10.841
	CNS0095598	Silvery flower (diploied) 1	15.834
	CNS0095599	Silvery flower (diploied) 2	13.960
	CNS0095600	Silvery flower (diploied) 3	14.683
	CNS0095601	Golden flower (diploid) 1	13.827
	CNS0095602	Golden flower (diploid) 2	16.884
	CNS0095603	Golden flower (diploid) 3	17.268
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.164
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.441
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.253
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.927
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.603
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.745
	CNS0095610	Silvery flower (tetraploid) 1	16.192
	CNS0095611	Silvery flower (tetraploid) 2	15.342
	CNS0095612	Silvery flower (tetraploid) 3	28.123
	CNS0095613	Golden flower (tetraploid) 1	13.637
	CNS0095614	Golden flower (tetraploid) 2	12.432
	CNS0095615	Golden flower (tetraploid) 3	15.228
CRA001975	CRR073297	Stem 1	21.992
	CRR073298	Stem 2	16.015
	CRR073299	Stem 3	16.329
	CRR073300	Leaf 1	15.923
	CRR073301	Leaf 2	15.450
	CRR073302	Leaf 3	8.859
	CRR073303	Juvenile bud 1	13.585
	CRR073304	Juvenile bud 2	11.276
	CRR073305	Juvenile bud 3	17.630
	CRR073306	Third green 1	15.210
	CRR073307	Third green 2	10.410
	CRR073308	Third green 3	13.760
	CRR073309	Second white 1	21.492
	CRR073310	Second white 2	24.210
	CRR073311	Second white 3	23.255
	CRR073312	Silver flowering 1	28.086
	CRR073313	Silver flowering 2	26.530
	CRR073314	Silver flowering 3	25.029
	CRR073315	Gold flowering 1	21.749
	CRR073316	Gold flowering 2	26.874
	CRR073317	Gold flowering 3	15.593
	CRR073318	Tawny withering 1	35.488
	CRR073319	Tawny withering 2	31.153
	CRR073320	Tawny withering 3	37.078