Gene detail

Detail information of GWHGAAZE027376

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAD16810.1	0	putative leucine rich repeat-type serine/threonine receptor-like kinase [Daucus carota]
COG	YP_004775215.1	2E-41	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9ZWC8\|BRL1_ARATH	0	Serine/threonine-protein kinase BRI1-like 1 (Precursor)
trEMBL	tr\|Q75N53\|Q75N53_DAUCA	0	Putative leucine rich repeat-type serine/threonine receptor-like kinase {ECO:0000313\|EMBL:BAD16810.1}
TAIR10	AT1G55610.2	0	BRI1 like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18458136	18461654	-
GWHAAZE00000008	mRNA	18458136	18461654	-
GWHAAZE00000008	exon	18458136	18461654	-
GWHAAZE00000008	CDS	18458136	18461654	-

Transcript Sequence
>GWHTAAZE027410 ATGGCCTTTTCGGAGGCAAGAAAATTATCAACGGAGCCAAGTAGTAGCAAAGATGATGATATATTGGGGCTAATTGGTTTCAAGCAATCCTCAATCGAAGCTGACCCACATGGATTCTTGACTGAATGGACTCTTTCTTCATCAACCCCCTGCTCGTGGCGGGGTGTCACTTGCTCCGGCGAAAACAGAGTTACCGAGCTCAATCTCACCGGGGCCGGCCTAATCGGCCGTCTTCACCTCTCCGATCTCATGGCCATGCCAAGTCTCTCACACCTCTATTTTAGTCGGAACTTCTTCTCCGGTAACCTCTCCTCAGATACTCGCAGTTGCAGCTTTCAGATTCTTGATTTATCGGCCAACAATTTTTCCGAACCTGTTGATTCAAAGTCTGTGCTACTCTCATGTGACCGCCTTGTCGCCCTCGACCTCTCTGCCAACCAGATTTCAGACTCGACTCTCTTGACCGACTCTTTATCAAACTGTCACAACTTGAATCTTCTCAATCTGTCAAACAACAACCTCAACGGCAAGCTACCCAGCTCTCTCTCTTCTTGCAAAAATTTAACGGTACTTGACCTCTCCGGAAACCTCTTCTCCGGTGAAATACCGGCCACTATCTCACTACCTTCTCTCAAGTTTCTTGATCTCTCAAACAATAACTTCAGCGGGAACTTTTTTGAGCTCGAATTTGGTAGTTGCAGCAGTCTCAATCTACTCAATATCTCTCATAATGCGCTCTTTGGTACTGGGTTTCCAGTTAGCTTGTGGAATTGCCAGAATCTCGAGTCACTGGATATTAGCCGCAACGATCTCCGTTTGAAGATTCCAGGGACCTTGTTAGGCAAGCTGAAGAAGCTGAGGTACTTGTCTTTAGCTCACAATCATTTTTTTGAAGACATTCCACCGGATTTGGGGCAAATTTGCGGCACTCTTGAGGAGCTAGATCTATCTGGAAACCAATTAACTGGTGGGCTTCCTCAAACATTTGCATTGTGTTCTTCACTGTTAAGCCTTAACCTCGGTAGCAATCAGCTTTCGGGCAATTTTATAACTACAGTGATAAGTACTCTTCCTAGTTTGAAGTATCTCTACGTACCATTTAATAACGTAAGTGGTAATGTGCCTCCGTCTTTAACAAATTTTACTCAGCTTCATGTCCTAGACCTAAGCTCCAATGCCTTCACGGGGACTATACCTTCTGGGTTTTGCTCATCAGCATCACCCTCCTCTGCCCTTGAAAAGATTCTCTTGGCCAATAATTATCTCACGGGGGAGGTACCAAAGGAGATTGGTAACTGCAAGAATTTGAAGACAGTTGATTTTAGCTTTAACAAACTTACTGGTTCAATTCCTTCGGAAATTTGGAGGCTGCCGTATATTTCAGATGTCATTATGTGGGCTAATAGCCTCACGGGTGAAATCCCAGAAGGGATTTGCATCAATGGGGGAAATCTTCAAACTCTGATTCTCAATAACAATTTTATAACTGGTGCAATTCCACTGTCCATTGTCAACTGCACTAATTTGATATGGGTTTCTCTTTCCAGCAACCGTCTTAAAGGGGAAATCCCTGCTGGCATTGGGAATTTACTTAACCTCGCAATCCTCCAATTGGGTAACAATTCTCTAAGTGGGGAAATCCCACCTGGGCTAGGTAAATGCAAGAGCCTCATTTGGCTTGATTTGAATAGCAATACTCTCACTGGTTCAGTCCCACCCGAGCTTGCCAATGAAGCTGGCCTTGTTGACCCCGGACTAGTTTCTGGGAAGCAATTTGCATTTGTGAGAAATGAGGGCGGGACAACATGCAGAGGTGCTGGTGGGCTAGTTGAATTCGAGGGGATTCGTTCTGAAAATCTGGCTAACTTTCCTATGGTTCACTCCTGCCCGTCTACAAGAATCTACTCTGGTGTGACAGTTTACACGTTCAAAAGCAATGGCAGCATGATCTACCTTGATCTGTCCTACAATTCCTTGTCCGGAGTTCTACCTGAAACCTTTGGTTCTTTGGTCTATTTGCAAGTTTTGAATCTGGGACACAACAATTTAACTGGAAATATCCCCTTCAGTTTTGGAGGTTTGAAGGTTGTTGGAGTTCTTGATATGTCTCATAATAATCTTGAAGGGTTCATCCCAGGGTCGCTTGGGGGGCTCACATTTCTCAGTGACCTTGATGTGTCCAACAACAACCTCAGCGGACCCATTCCCTCGGGTGGTCAGCTGACTACTTTCCCAGCTTCGAGATATGAAAACAACTCGGGCCTTTGTGGGGTTCCCTTGCCTCCTTGCAGCTCTGGAAATGGACACCACCCTCAAAAGCTTAACGGCCAAGGCAAGAAGCAGTCTGTAGCTGCAGGCGTGGTCATTGGCATTGCTATCTCTCTTTTCTGCGTCATCGTCCTCACGTTTGCCCTTTACAAGGTGAAGAAGTACCAGCAAAAGGAAGAAAAGAGAGACAAATACATTGAAAGCCTTCCAACTTCTGGCAGCAGCAGCTGGAAATTCTCCACCGTTCCCGAGCCTCTAAGCATCAACGTTGCCACATTTGAAAAGCCTCTGCTGAAGCTTACTTTTGCCCATCTCCTTGAAGCTACTAATGGTTTCAGTGCTGACAGCTTAATTGGGTCCGGAGGATTTGGTGAGGTCTACAAGGCCCAACTGAAAGACGGCAATGTTGTTGCGATTAAGAAGCTTATCCACGTTACAGGTCAGGGCGATAGAGAATTCATGGCAGAAATGGAAACTATAGGAAAGATCAAACATAGGAACCTGGTTCCTCTGCTGGGTTACTGCAAGATTGGTGAAGAGAGGCTTCTTGTGTACGAGTACATGAAATGGGGAAGTCTAGAATCTGTTCTTCACGAGAGGGCCAAAGGAGGGGATTCAAAGCTCGATTGGGCTGCTAGAAAGAAGATTGCGATTGGGTCGGCTAGGGGACTCGTGTTTCTTCACCACAGCTGCATACCTCACATTATCCACCGCGACATGAAGTCAAGTAATGTGCTTCTAGATGAAAACTTCGAGGCCAGGGTGTCTGATTTCGGTATGGCTAGACTGGTGAATGCTCTTGACACTCATCTCAGTGTGAGTACCCTCGCAGGTACTCCCGGTTATGTTCCCCCGGAGTACTACCAGAGTTTCAGATGCACTACAAAAGGGGATGTCTACAGTTACGGGGTTGTGTTACTAGAGCTTCTCTCAGGCAAGAGGCCAATAGACCCGACAACATTTGGTGATGACAACAATCTTGTTGGATGGGCGAAGCAGCTACACAAAGAGAAACGAATTCACGAGATACTGGATCCTGAATTACTATCACATATATCTGTTGAAGCTGAACTATTCCATTACCTAAGGATTGCTTTTCAATGCCTAGATGACAAGTCTTTCCGAAGGCCAACTATGATTCAGGTGATGGCCATGTTCAAAGAACTTCAAGTAGATTCAGAAAGTGATATTCTTGATGGCATGTCAGTCAAAAACGCCGTAATTGAGGAATCTCAGGAGAAGGAAATATAG

Network for GWHGAAZE027376

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	18	59	5.90E-11
PF13855.7	LRR_8	285	345	3.30E-08
PF13855.7	LRR_8	673	731	2.20E-09
PF00069.26	Pkinase	870	1140	2.00E-43

Protein Sequence

>GWHPAAZE027394
MAFSEARKLSTEPSSSKDDDILGLIGFKQSSIEADPHGFLTEWTLSSSTPCSWRGVTCSGENRVTELNLTGAGLIGRLHLSDLMAMPSLSHLYFSRNFFSGNLSSDTRSCSFQILDLSANNFSEPVDSKSVLLSCDRLVALDLSANQISDSTLLTDSLSNCHNLNLLNLSNNNLNGKLPSSLSSCKNLTVLDLSGNLFSGEIPATISLPSLKFLDLSNNNFSGNFFELEFGSCSSLNLLNISHNALFGTGFPVSLWNCQNLESLDISRNDLRLKIPGTLLGKLKKLRYLSLAHNHFFEDIPPDLGQICGTLEELDLSGNQLTGGLPQTFALCSSLLSLNLGSNQLSGNFITTVISTLPSLKYLYVPFNNVSGNVPPSLTNFTQLHVLDLSSNAFTGTIPSGFCSSASPSSALEKILLANNYLTGEVPKEIGNCKNLKTVDFSFNKLTGSIPSEIWRLPYISDVIMWANSLTGEIPEGICINGGNLQTLILNNNFITGAIPLSIVNCTNLIWVSLSSNRLKGEIPAGIGNLLNLAILQLGNNSLSGEIPPGLGKCKSLIWLDLNSNTLTGSVPPELANEAGLVDPGLVSGKQFAFVRNEGGTTCRGAGGLVEFEGIRSENLANFPMVHSCPSTRIYSGVTVYTFKSNGSMIYLDLSYNSLSGVLPETFGSLVYLQVLNLGHNNLTGNIPFSFGGLKVVGVLDMSHNNLEGFIPGSLGGLTFLSDLDVSNNNLSGPIPSGGQLTTFPASRYENNSGLCGVPLPPCSSGNGHHPQKLNGQGKKQSVAAGVVIGIAISLFCVIVLTFALYKVKKYQQKEEKRDKYIESLPTSGSSSWKFSTVPEPLSINVATFEKPLLKLTFAHLLEATNGFSADSLIGSGGFGEVYKAQLKDGNVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKWGSLESVLHERAKGGDSKLDWAARKKIAIGSARGLVFLHHSCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLVNALDTHLSVSTLAGTPGYVPPEYYQSFRCTTKGDVYSYGVVLLELLSGKRPIDPTTFGDDNNLVGWAKQLHKEKRIHEILDPELLSHISVEAELFHYLRIAFQCLDDKSFRRPTMIQVMAMFKELQVDSESDILDGMSVKNAVIEESQEKEI

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.059
	SRR3591706	second leaf	1.692
	SRR3591707	mature leaf	1.767
	SRR3591708	Shoot apex	3.291
	SRR3591709	Stem	11.096
	SRR3591710	White floral bud	1.925
	SRR3591711	White flower	4.146
	SRR3591712	Green floral bud	1.208
	SRR3591713	Yellow flower	6.265
SRP173429	SRR8316895	Juvenile bud stage	3.502
	SRR8316896	Juvenile bud stage	4.618
	SRR8316897	Juvenile bud stage	1.605
	SRR8316894	Third green stage	1.167
	SRR8316900	Third green stage	0.918
	SRR8316901	Third green stage	1.588
	SRR8316898	Complete white stage	0.096
	SRR8316899	Complete white stage	1.688
	SRR8316903	Complete white stage	0.827
	SRR8316902	Silver flowering stage	0.815
	SRR8316904	Silver flowering stage	1.055
	SRR8316905	Silver flowering stage	0.202
	SRR8316906	Gold flowering stage	3.458
	SRR8316907	Gold flowering stage	5.436
	SRR8316908	Gold flowering stage	4.017
SRP132670	SRR6706286	Control	1.319
	SRR6706287	Light intensity 50%	1.195
	SRR6706288	Light intensity 20%	1.135
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.288
	CNS0095593	Slightly white alabastrum(diploid) 2	1.886
	CNS0095594	Slightly white alabastrum(diploid) 3	2.764
	CNS0095595	Whole white alabastrum(diploid) 2	1.752
	CNS0095596	Whole white alabastrum(diploid) 3	0.259
	CNS0095597	Whole white alabastrum(diploid) 4	1.294
	CNS0095598	Silvery flower (diploied) 1	4.442
	CNS0095599	Silvery flower (diploied) 2	4.204
	CNS0095600	Silvery flower (diploied) 3	3.260
	CNS0095601	Golden flower (diploid) 1	1.928
	CNS0095602	Golden flower (diploid) 2	8.411
	CNS0095603	Golden flower (diploid) 3	7.276
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.056
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.241
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.802
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.375
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.868
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.769
	CNS0095610	Silvery flower (tetraploid) 1	3.175
	CNS0095611	Silvery flower (tetraploid) 2	2.647
	CNS0095612	Silvery flower (tetraploid) 3	1.854
	CNS0095613	Golden flower (tetraploid) 1	4.762
	CNS0095614	Golden flower (tetraploid) 2	6.493
	CNS0095615	Golden flower (tetraploid) 3	9.994
CRA001975	CRR073297	Stem 1	3.482
	CRR073298	Stem 2	2.546
	CRR073299	Stem 3	3.044
	CRR073300	Leaf 1	0.949
	CRR073301	Leaf 2	1.230
	CRR073302	Leaf 3	0.737
	CRR073303	Juvenile bud 1	1.523
	CRR073304	Juvenile bud 2	0.251
	CRR073305	Juvenile bud 3	2.774
	CRR073306	Third green 1	0.210
	CRR073307	Third green 2	0.440
	CRR073308	Third green 3	0.502
	CRR073309	Second white 1	0.848
	CRR073310	Second white 2	2.660
	CRR073311	Second white 3	6.137
	CRR073312	Silver flowering 1	20.002
	CRR073313	Silver flowering 2	18.453
	CRR073314	Silver flowering 3	13.638
	CRR073315	Gold flowering 1	3.301
	CRR073316	Gold flowering 2	6.064
	CRR073317	Gold flowering 3	5.250
	CRR073318	Tawny withering 1	25.648
	CRR073319	Tawny withering 2	15.825
	CRR073320	Tawny withering 3	24.566