Gene detail

Detail information of GWHGAAZE027377

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095665.1	0	PREDICTED: peroxisome biogenesis protein 5 [Sesamum indicum]
COG	YP_001660819.1	6E-18	hypothetical protein MAE_58050
Swissprot	tr\|Q9FMA3\|PEX5_ARATH	0	Peroxisome biogenesis protein 5
trEMBL	tr\|M1ASF1\|M1ASF1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400029209}
TAIR10	AT5G56290.1	0	peroxin 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18485151	18499597	+
GWHAAZE00000008	mRNA	18485151	18499597	+
GWHAAZE00000008	exon	18485151	18485270	+
GWHAAZE00000008	exon	18485971	18486090	+
GWHAAZE00000008	exon	18486164	18486320	+
GWHAAZE00000008	exon	18486624	18486817	+
GWHAAZE00000008	exon	18486890	18487003	+
GWHAAZE00000008	exon	18487793	18488041	+
GWHAAZE00000008	exon	18489012	18489134	+
GWHAAZE00000008	exon	18489624	18489795	+
GWHAAZE00000008	exon	18490564	18490727	+
GWHAAZE00000008	exon	18490969	18491162	+
GWHAAZE00000008	exon	18491642	18491888	+
GWHAAZE00000008	exon	18492828	18492912	+
GWHAAZE00000008	exon	18493556	18493665	+
GWHAAZE00000008	exon	18493894	18494118	+
GWHAAZE00000008	exon	18498651	18498716	+
GWHAAZE00000008	exon	18499017	18499111	+
GWHAAZE00000008	exon	18499199	18499597	+
GWHAAZE00000008	CDS	18485151	18485270	+
GWHAAZE00000008	CDS	18485971	18486090	+
GWHAAZE00000008	CDS	18486164	18486320	+
GWHAAZE00000008	CDS	18486624	18486817	+
GWHAAZE00000008	CDS	18486890	18487003	+
GWHAAZE00000008	CDS	18487793	18488041	+
GWHAAZE00000008	CDS	18489012	18489134	+
GWHAAZE00000008	CDS	18489624	18489795	+
GWHAAZE00000008	CDS	18490564	18490727	+
GWHAAZE00000008	CDS	18490969	18491162	+
GWHAAZE00000008	CDS	18491642	18491888	+
GWHAAZE00000008	CDS	18492828	18492912	+
GWHAAZE00000008	CDS	18493556	18493665	+
GWHAAZE00000008	CDS	18493894	18494118	+
GWHAAZE00000008	CDS	18498651	18498716	+
GWHAAZE00000008	CDS	18499017	18499111	+
GWHAAZE00000008	CDS	18499199	18499277	+
GWHAAZE00000008	three_prime_UTR	18499278	18499597	+

Transcript Sequence
>GWHTAAZE027411 ATGGCGATGCGAGAGCTTGTGACGGGTGGGGCGGCCTGTGCTGTGCCCGGTTCTTCTTCTTCCTCCTCCAATCCCCTCGGCGCTTTCGCCAGCGCCCTTATGGGCTCTTCCTCCCAAAAGGATCGGATTCAGGAGATTCCTACATCAATACCTACAACTTCTGGTAGTAATATATATGAAGGGCCTTCGACAGTCCTCCCGGGATCAGAGTTTGACCACCCATTGCAGCCCGATGGCCAGGGTTCAGAATTTCTCCGTGGCTTCCGCTCTGCAGATCAGAATGGGCTTGCAGCTGCTTGGGATGAGATACACAATCCTCAGGCTCCTCAATTTCAGGGAAGAGGGAGTCCAACCAACTTCCCTTTAGAGCATAATCGCCTTCAACCGGATTTGGGTGGGCCACCACAAAGAGTGTTGTCAAGTTTTTTGCACTCATTTGTTAACAGTACCCACGGTGGAGTTCCTTTTCGTTCTGCTGCACTTCCAGTATTAGGATTGTCTGATAGTGACAAACAATGCATACGAGATCGTAGCAGTATCATGGCACGGCACTTCTTTGGTGATAAGAGCGAGGACTTTGTCAATTCACAGGTTAATGTAGCCTTCCCAGTATCACAAAAGCCTTATGATTCTCCTAGTCGATGTCCTCCTTCCTTTTTCCCCTGCTTTTCCTGGGAGTATTCCTTGTCTTGGGGGCCAAGTGAAGTAAATGCGCTATTATCTTCGTTAGAAATTGATAATGATATCCGGGCCAGGGGGCCCCTACCTGGAAGATTTCGGGAGCTGGAGGAGTATTGGAATGATTCCCAAGTTATGAAGCCTGGACCTCATGCTGGAGATGGATGGGTTACTGAATTTACACAACACAGAGTAGGAAATGGTGACCCTAATGCTTGGGCTCATTCATTTGAACAACAACATGGAGCTAATGGTTGGGCTTCTGAATTTGACCATGAGCAGTCGCAGATTACAACACTAGATCAAATGAGAGGTGCAAATATTCCAAGCTTAGCTGCCATGGAGCAGACTCGTATGCTAGCACACACATTAGCTCAAAATGGGGACCCTAAGTTCCAGAACTCAAAGTTTTTCCAATTTGTGTCGAAGATGAGTCGTGGTGAACTTAGTATCGGGGATAATCAAGTGAAGCCAATTGCGTTCTCTACACCAGGAGATTGGGCAACAGAATATCAGCATCAGTATAATGGAGGCCAATCATGGGCTGACCAGTTTGTGCGTGATGAGGCAAGGCCAGTTGTTACAATTGGAGGGGGCATAAGAGTGTGGATGCTGCAACAAGATCTAAGAGTTCCAAATTTATTTTGCTTTTCCCAGCTGTTGGGCTTGGGCGTAGTTCTTCCTAGTTTCGTTGTTTCCTTTTCCTTGCAGTCTGCTCTTTATGGCGGATACCTTCTTTCTCTTGGGCCTGATAGGTGGGTGAATGAATATACTACTGAGCGCGAGCACCATGGATCAGTTGATGATCAGTGGGTCAGTGAATTCTCCAAGTTGCATGTCCATGACTGGGTGGATGAATTTGGGCGTCAGGTTGGTGAAGGGGCACTGGGGGACGAATCTGATGACAATTGGGCAAATGCATATGATGAGTACTTAAATGAGCAATCCACTGTCAAGCAGCGATCAGAAACTTCGAGGGGGGTCTATGTCTTTTCTGATTTGAATCCTTATGTTGGTCACCCCAATCCCTTGCAAGAAGGCCAGGAACTATTTCGCAAAGGTCTTCTAAGTGAAGCAGTGCTTGCTTTAGAAGCTGAAGTTCTGAAGAACCCTGACAATGCTGAGGGTTGGAGATTACTTGGCATAGCCCATGCTGAGAATGATGATGATCAACAGGCTATTGCATCCATGATGCGGGCACAGGAGGTTGAACCAACAAACCTGGAAGTGCTTCTTGCTCTTGGCGTGAGTCATACAAATGAATTGGAGCAAGCAGCTGCATTGAAGTACTTATTTAGTTGGCTACGCCACCATCCGAAGTATGGGACAATTGCCCCTCCGGAACAGCCTGCTTCTCTGTATTATGCGGATGTTGCAAGATTTTTCAATGATGCTGCTCAAATGTCACCCGAGGATGCTGATGTACATGTAGTACTCGGTGTCTTGTACAACTTGTCCCGAGAATATGACAAAGCCATTGAATCCTTCAAGATGGCTTTGAAGCTCAAGCCGCGAGATTACTCTCTATGGAACAAGCTTGGTGCAACACAAGCGAATAGTGTTCAGAGTGCTGATGCCATACTGGCCTATCAACAGGCGCTAGATTTAAAACCAAATTACGTTCGTGCTTGGGCAAACATGGGTATCAGTTATGCTAACCAGGGTATGTACGAGGATTCAATTCGCTACTATGTCCGGGCCCTTGCTATGAATCCAAAGGCAGATAATGCTTGGCAGTATTTGAGAATTTCTTTAAGCTGTGCTTCTAGGAATGACATGATCGAAGCTTGTGACTCCCGGAATCTTGATGTTCTCCAAAAAGAGTTCCCGCTGTAGTATGCGTGTATCTATACGTTTCAATTTGGATAAATGACAATGGGCTGTTTATGATGTTTGAATTGGGATTCTTCCTAGGTTCTCTTTAATATCAGCCCGTACCATAATTTGACATTTAAGCTCTATATTTTGCTGGATTGAGCCACCAATTTACGGGAATCTCAGTTCTGGTATAGCCGCCGCCTCGTATAGAATTTGGCTAATCTTGTCTCGTAAGATCTGCAATAAATGTATCATTTGATCTATGCTAGACTCAGAAAGTTATATGAAACAAAAGATGAGATATATAAAATAAAGACTTGATTATTGGTAAACATAAA

Network for GWHGAAZE027377

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13432.7	TPR_16	570	622	0.0087
PF13181.7	TPR_8	699	731	0.021
PF00515.29	TPR_1	768	799	7.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13342	PEX5, PXR1	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.123
	SRR3591706	second leaf	35.123
	SRR3591707	mature leaf	44.004
	SRR3591708	Shoot apex	32.662
	SRR3591709	Stem	42.836
	SRR3591710	White floral bud	37.227
	SRR3591711	White flower	43.399
	SRR3591712	Green floral bud	43.440
	SRR3591713	Yellow flower	51.305
SRP173429	SRR8316895	Juvenile bud stage	28.242
	SRR8316896	Juvenile bud stage	43.667
	SRR8316897	Juvenile bud stage	21.092
	SRR8316894	Third green stage	16.417
	SRR8316900	Third green stage	52.290
	SRR8316901	Third green stage	48.669
	SRR8316898	Complete white stage	21.892
	SRR8316899	Complete white stage	68.162
	SRR8316903	Complete white stage	36.498
	SRR8316902	Silver flowering stage	16.696
	SRR8316904	Silver flowering stage	23.416
	SRR8316905	Silver flowering stage	12.701
	SRR8316906	Gold flowering stage	47.888
	SRR8316907	Gold flowering stage	44.310
	SRR8316908	Gold flowering stage	50.930
SRP132670	SRR6706286	Control	55.194
	SRR6706287	Light intensity 50%	56.327
	SRR6706288	Light intensity 20%	59.747
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.537
	CNS0095593	Slightly white alabastrum(diploid) 2	30.120
	CNS0095594	Slightly white alabastrum(diploid) 3	32.358
	CNS0095595	Whole white alabastrum(diploid) 2	26.766
	CNS0095596	Whole white alabastrum(diploid) 3	26.455
	CNS0095597	Whole white alabastrum(diploid) 4	26.851
	CNS0095598	Silvery flower (diploied) 1	35.586
	CNS0095599	Silvery flower (diploied) 2	32.503
	CNS0095600	Silvery flower (diploied) 3	55.918
	CNS0095601	Golden flower (diploid) 1	32.513
	CNS0095602	Golden flower (diploid) 2	59.011
	CNS0095603	Golden flower (diploid) 3	57.831
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.946
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.651
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.840
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.258
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.614
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.018
	CNS0095610	Silvery flower (tetraploid) 1	53.044
	CNS0095611	Silvery flower (tetraploid) 2	60.531
	CNS0095612	Silvery flower (tetraploid) 3	61.630
	CNS0095613	Golden flower (tetraploid) 1	39.240
	CNS0095614	Golden flower (tetraploid) 2	59.211
	CNS0095615	Golden flower (tetraploid) 3	63.875
CRA001975	CRR073297	Stem 1	46.796
	CRR073298	Stem 2	45.410
	CRR073299	Stem 3	50.257
	CRR073300	Leaf 1	52.251
	CRR073301	Leaf 2	52.970
	CRR073302	Leaf 3	42.930
	CRR073303	Juvenile bud 1	51.221
	CRR073304	Juvenile bud 2	41.840
	CRR073305	Juvenile bud 3	71.440
	CRR073306	Third green 1	21.206
	CRR073307	Third green 2	17.180
	CRR073308	Third green 3	21.395
	CRR073309	Second white 1	31.591
	CRR073310	Second white 2	34.710
	CRR073311	Second white 3	33.317
	CRR073312	Silver flowering 1	30.885
	CRR073313	Silver flowering 2	28.568
	CRR073314	Silver flowering 3	29.325
	CRR073315	Gold flowering 1	39.426
	CRR073316	Gold flowering 2	58.011
	CRR073317	Gold flowering 3	43.717
	CRR073318	Tawny withering 1	37.599
	CRR073319	Tawny withering 2	31.077
	CRR073320	Tawny withering 3	30.558