Detail information of GWHGAAZE027378


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009765072.14.6893E-145PREDICTED: scarecrow-like protein 18 [Nicotiana sylvestris]
Swissprottr|Q9ZWC5|SCL18_ARATH2E-88Scarecrow-like protein 18
trEMBLtr|B5M4A5|B5M4A5_TOBAC4E-144Lateral suppressor protein {ECO:0000313|EMBL:ACH47034.1}
TAIR10AT1G55580.15E-69GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1851215018513049-
GWHAAZE00000008mRNA1851215018513049-
GWHAAZE00000008exon1851215018513049-
GWHAAZE00000008CDS1851215018513049-
Transcript Sequence

Network for GWHGAAZE027378

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS12981.20E-90
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.219
SRR3591709Stem0.000
SRR3591710White floral bud0.947
SRR3591711White flower0.501
SRR3591712Green floral bud0.266
SRR3591713Yellow flower0.269
SRP173429 SRR8316895Juvenile bud stage 0.480
SRR8316896Juvenile bud stage 0.705
SRR8316897Juvenile bud stage 0.087
SRR8316894Third green stage 0.209
SRR8316900Third green stage 0.277
SRR8316901Third green stage 0.234
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.301
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.469
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.570
SRR6706287Light intensity 50%0.477
SRR6706288Light intensity 20%0.281
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.247
CNS0095593Slightly white alabastrum(diploid) 20.118
CNS0095594Slightly white alabastrum(diploid) 30.423
CNS0095595Whole white alabastrum(diploid) 20.153
CNS0095596Whole white alabastrum(diploid) 30.019
CNS0095597Whole white alabastrum(diploid) 40.012
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.323
CNS0095603Golden flower (diploid) 30.189
CNS0095604Slightly white alabastrum(tetraploid) 10.641
CNS0095605Slightly white alabastrum(tetraploid) 20.259
CNS0095606Slightly white alabastrum(tetraploid) 30.461
CNS0095607Whole white alabastrum(tetraploid) 10.093
CNS0095608Whole white alabastrum(tetraploid) 20.657
CNS0095609Whole white alabastrum(tetraploid) 30.247
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.167
CNS0095612Silvery flower (tetraploid) 30.054
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.203
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.488
CRR073298Stem 20.501
CRR073299Stem 30.865
CRR073300Leaf 10.073
CRR073301Leaf 20.181
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.213
CRR073304Juvenile bud 20.031
CRR073305Juvenile bud 30.166
CRR073306Third green 10.055
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.088
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.158
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000