Detail information of GWHGAAZE027386


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP35363.10hypothetical protein JCGZ_10347 [Jatropha curcas]
COGYP_001514572.10.000000001WD repeat-containing protein
trEMBLtr|A0A067KK46|A0A067KK46_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP35363.1}
TAIR10AT2G18900.10Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1870383118713429-
GWHAAZE00000008mRNA1870383118713429-
GWHAAZE00000008exon1871331018713429-
GWHAAZE00000008exon1871304118713226-
GWHAAZE00000008exon1871223218712471-
GWHAAZE00000008exon1871092918711331-
GWHAAZE00000008exon1871064718710765-
GWHAAZE00000008exon1871047418710551-
GWHAAZE00000008exon1870997418710114-
GWHAAZE00000008exon1870780418707970-
GWHAAZE00000008exon1870750818707586-
GWHAAZE00000008exon1870738218707437-
GWHAAZE00000008exon1870641818706547-
GWHAAZE00000008exon1870611718706249-
GWHAAZE00000008exon1870528218705448-
GWHAAZE00000008exon1870472318704915-
GWHAAZE00000008exon1870383118704036-
GWHAAZE00000008CDS1871331018713429-
GWHAAZE00000008CDS1871304118713226-
GWHAAZE00000008CDS1871223218712471-
GWHAAZE00000008CDS1871092918711331-
GWHAAZE00000008CDS1871064718710765-
GWHAAZE00000008CDS1871047418710551-
GWHAAZE00000008CDS1870997418710114-
GWHAAZE00000008CDS1870780418707970-
GWHAAZE00000008CDS1870750818707586-
GWHAAZE00000008CDS1870738218707437-
GWHAAZE00000008CDS1870641818706547-
GWHAAZE00000008CDS1870611718706249-
GWHAAZE00000008CDS1870528218705448-
GWHAAZE00000008CDS1870472318704915-
GWHAAZE00000008CDS1870383118704036-
Transcript Sequence

Network for GWHGAAZE027386

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402272560.25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14552NAN1, UTP17, WDR75 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.416
SRR3591706second leaf8.096
SRR3591707mature leaf13.011
SRR3591708Shoot apex29.666
SRR3591709Stem17.509
SRR3591710White floral bud14.768
SRR3591711White flower32.448
SRR3591712Green floral bud23.568
SRR3591713Yellow flower26.183
SRP173429 SRR8316895Juvenile bud stage 18.174
SRR8316896Juvenile bud stage 24.144
SRR8316897Juvenile bud stage 10.595
SRR8316894Third green stage 9.869
SRR8316900Third green stage 26.414
SRR8316901Third green stage 20.402
SRR8316898Complete white stage 4.829
SRR8316899Complete white stage 25.638
SRR8316903Complete white stage 9.017
SRR8316902Silver flowering stage7.943
SRR8316904Silver flowering stage9.567
SRR8316905Silver flowering stage4.536
SRR8316906Gold flowering stage 17.505
SRR8316907Gold flowering stage 16.603
SRR8316908Gold flowering stage 21.049
SRP132670SRR6706286Control14.102
SRR6706287Light intensity 50%15.429
SRR6706288Light intensity 20%16.917
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.124
CNS0095593Slightly white alabastrum(diploid) 212.358
CNS0095594Slightly white alabastrum(diploid) 39.412
CNS0095595Whole white alabastrum(diploid) 210.959
CNS0095596Whole white alabastrum(diploid) 310.273
CNS0095597Whole white alabastrum(diploid) 48.463
CNS0095598Silvery flower (diploied) 115.677
CNS0095599Silvery flower (diploied) 213.066
CNS0095600Silvery flower (diploied) 320.613
CNS0095601Golden flower (diploid) 18.875
CNS0095602Golden flower (diploid) 219.073
CNS0095603Golden flower (diploid) 318.205
CNS0095604Slightly white alabastrum(tetraploid) 114.445
CNS0095605Slightly white alabastrum(tetraploid) 211.371
CNS0095606Slightly white alabastrum(tetraploid) 334.881
CNS0095607Whole white alabastrum(tetraploid) 15.717
CNS0095608Whole white alabastrum(tetraploid) 24.290
CNS0095609Whole white alabastrum(tetraploid) 324.593
CNS0095610Silvery flower (tetraploid) 129.211
CNS0095611Silvery flower (tetraploid) 228.577
CNS0095612Silvery flower (tetraploid) 320.967
CNS0095613Golden flower (tetraploid) 110.851
CNS0095614Golden flower (tetraploid) 224.389
CNS0095615Golden flower (tetraploid) 316.821
CRA001975CRR073297Stem 123.863
CRR073298Stem 219.196
CRR073299Stem 325.098
CRR073300Leaf 119.704
CRR073301Leaf 218.238
CRR073302Leaf 321.947
CRR073303Juvenile bud 120.364
CRR073304Juvenile bud 212.312
CRR073305Juvenile bud 326.080
CRR073306Third green 12.538
CRR073307Third green 21.854
CRR073308Third green 33.399
CRR073309Second white 110.927
CRR073310Second white 210.112
CRR073311Second white 311.113
CRR073312Silver flowering 17.785
CRR073313Silver flowering 212.266
CRR073314Silver flowering 37.815
CRR073315Gold flowering 111.439
CRR073316Gold flowering 219.925
CRR073317Gold flowering 317.026
CRR073318Tawny withering 117.236
CRR073319Tawny withering 212.482
CRR073320Tawny withering 317.754