Gene detail

Detail information of GWHGAAZE027390

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006352582.1	1.16286E-94	PREDICTED: arginine/serine-rich protein 45 isoform X2 [Solanum tuberosum]
COG	YP_005061084.1	0.00000001	RRM domain-containing RNA-binding protein
Swissprot	tr\|Q9SEE9\|SR45_ARATH	7E-68	Serine/arginine-rich splicing factor SR45
trEMBL	tr\|M1ASG0\|M1ASG0_SOLTU	2E-95	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400029230}
TAIR10	AT1G16610.1	6E-47	arginine/serine-rich 45

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	18782428	18787351	+
GWHAAZE00000008	mRNA	18782428	18787351	+
GWHAAZE00000008	exon	18782428	18782441	+
GWHAAZE00000008	exon	18783568	18783656	+
GWHAAZE00000008	exon	18786393	18786439	+
GWHAAZE00000008	exon	18786524	18786604	+
GWHAAZE00000008	exon	18786700	18786865	+
GWHAAZE00000008	exon	18786965	18787205	+
GWHAAZE00000008	exon	18787282	18787351	+
GWHAAZE00000008	CDS	18782428	18782441	+
GWHAAZE00000008	CDS	18783568	18783656	+
GWHAAZE00000008	CDS	18786393	18786439	+
GWHAAZE00000008	CDS	18786524	18786604	+
GWHAAZE00000008	CDS	18786700	18786865	+
GWHAAZE00000008	CDS	18786965	18787205	+
GWHAAZE00000008	CDS	18787282	18787351	+

Transcript Sequence
>GWHTAAZE027424 ATGGACCATCTCAGGAAAGCTTCCCCTATTCCTGAATCTCTTGTTCTTCACATCGGTCAGCTCACCAGAAATGTGAATGAAAATCATTTAAAAGAAATATTCGGTAACTTTGGTGAAGTTGTACATGTGCGGCTGGCGATGGATCATACTGTTAACCTTCCAAAAGGTTCTGGATATGTTGAGTTTAAGATGAGAGCTGATGCTGAGAAGGCCCAGGCATATATGGATGGTGCCCAGATTGATGGGAAAGTTGTTCAAGCAAAGTTTACATTGCCTGAGCGGAAGAAAGTTTCATCGCCTCCCAAGGCTGTTGGCACTGCTTCAAGGAGAGATGCTCCCAAACTTGATACTGTTGGTGCCAATGTAGAAAAGGATGGGCCGAAGCGGCCGAAAGAATCATCTCCTCGTAGGAGACCTCTTTCACCACCACGAAGGCGATCACCTATAGCAAGAAGAGGTTCTCCTAGACGAGAGCCAAATTCTCCTCCCCGTCGACGTGCCGATTCTCCTGTTCGTCGCCGGGTGGACTCTCCATATCGTCGAGGTGGTTCACCACCTCCCAGGAGGAGACCTGCATCTCCACCCAGAGGTCGCTCACCATCCTCTCCACCAAGACGGTATAATAGATCACCTCCCAGGGCCTCTCCCCGAAGGATGCGTGGTAGTCCTGTTCGAAGACGTTCTCCCCTTCCTCCAAGGCGCCGGTAA

Network for GWHGAAZE027390

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	17	85	1.00E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14325	RNPS1	RNA transport	map03013
K14325	RNPS1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.028
	SRR3591706	second leaf	21.127
	SRR3591707	mature leaf	23.440
	SRR3591708	Shoot apex	90.715
	SRR3591709	Stem	37.216
	SRR3591710	White floral bud	49.919
	SRR3591711	White flower	68.363
	SRR3591712	Green floral bud	57.642
	SRR3591713	Yellow flower	43.440
SRP173429	SRR8316895	Juvenile bud stage	48.477
	SRR8316896	Juvenile bud stage	70.505
	SRR8316897	Juvenile bud stage	24.199
	SRR8316894	Third green stage	24.399
	SRR8316900	Third green stage	58.151
	SRR8316901	Third green stage	63.855
	SRR8316898	Complete white stage	19.083
	SRR8316899	Complete white stage	61.358
	SRR8316903	Complete white stage	38.889
	SRR8316902	Silver flowering stage	27.116
	SRR8316904	Silver flowering stage	31.617
	SRR8316905	Silver flowering stage	15.974
	SRR8316906	Gold flowering stage	50.463
	SRR8316907	Gold flowering stage	55.532
	SRR8316908	Gold flowering stage	55.702
SRP132670	SRR6706286	Control	52.229
	SRR6706287	Light intensity 50%	50.845
	SRR6706288	Light intensity 20%	51.532
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.442
	CNS0095593	Slightly white alabastrum(diploid) 2	50.691
	CNS0095594	Slightly white alabastrum(diploid) 3	41.506
	CNS0095595	Whole white alabastrum(diploid) 2	41.046
	CNS0095596	Whole white alabastrum(diploid) 3	44.478
	CNS0095597	Whole white alabastrum(diploid) 4	40.645
	CNS0095598	Silvery flower (diploied) 1	39.942
	CNS0095599	Silvery flower (diploied) 2	36.382
	CNS0095600	Silvery flower (diploied) 3	55.110
	CNS0095601	Golden flower (diploid) 1	43.428
	CNS0095602	Golden flower (diploid) 2	60.822
	CNS0095603	Golden flower (diploid) 3	57.538
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.646
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.519
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.555
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.678
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.331
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.851
	CNS0095610	Silvery flower (tetraploid) 1	43.520
	CNS0095611	Silvery flower (tetraploid) 2	53.880
	CNS0095612	Silvery flower (tetraploid) 3	51.569
	CNS0095613	Golden flower (tetraploid) 1	30.802
	CNS0095614	Golden flower (tetraploid) 2	39.464
	CNS0095615	Golden flower (tetraploid) 3	46.920
CRA001975	CRR073297	Stem 1	115.651
	CRR073298	Stem 2	103.244
	CRR073299	Stem 3	125.681
	CRR073300	Leaf 1	100.395
	CRR073301	Leaf 2	112.359
	CRR073302	Leaf 3	83.893
	CRR073303	Juvenile bud 1	82.491
	CRR073304	Juvenile bud 2	66.964
	CRR073305	Juvenile bud 3	109.251
	CRR073306	Third green 1	53.087
	CRR073307	Third green 2	46.614
	CRR073308	Third green 3	51.171
	CRR073309	Second white 1	68.175
	CRR073310	Second white 2	43.711
	CRR073311	Second white 3	48.131
	CRR073312	Silver flowering 1	45.319
	CRR073313	Silver flowering 2	56.716
	CRR073314	Silver flowering 3	48.275
	CRR073315	Gold flowering 1	44.999
	CRR073316	Gold flowering 2	60.650
	CRR073317	Gold flowering 3	59.757
	CRR073318	Tawny withering 1	110.443
	CRR073319	Tawny withering 2	94.286
	CRR073320	Tawny withering 3	105.331