Gene detail

Detail information of GWHGAAZE027414

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270595.3	0	PREDICTED: DNA primase small subunit [Vitis vinifera]
COG	YP_004004165.1	0.000000003	DNA primase, small subunit
trEMBL	tr\|D7TVE8\|D7TVE8_VITVI	0	DNA primase {ECO:0000256\|RuleBase:RU003514}
TAIR10	AT5G41880.1	3E-148	DNA primases;DNA primases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	19477102	19484175	+
GWHAAZE00000008	mRNA	19477102	19484175	+
GWHAAZE00000008	exon	19477102	19477225	+
GWHAAZE00000008	exon	19478641	19478736	+
GWHAAZE00000008	exon	19478864	19479039	+
GWHAAZE00000008	exon	19479144	19479221	+
GWHAAZE00000008	exon	19479322	19479433	+
GWHAAZE00000008	exon	19480025	19480109	+
GWHAAZE00000008	exon	19480210	19480261	+
GWHAAZE00000008	exon	19480348	19480409	+
GWHAAZE00000008	exon	19480752	19480867	+
GWHAAZE00000008	exon	19480986	19481107	+
GWHAAZE00000008	exon	19481299	19481367	+
GWHAAZE00000008	exon	19481530	19481734	+
GWHAAZE00000008	exon	19481983	19482056	+
GWHAAZE00000008	exon	19482640	19482688	+
GWHAAZE00000008	exon	19483127	19483206	+
GWHAAZE00000008	exon	19483911	19484175	+
GWHAAZE00000008	CDS	19477102	19477225	+
GWHAAZE00000008	CDS	19478641	19478736	+
GWHAAZE00000008	CDS	19478864	19479039	+
GWHAAZE00000008	CDS	19479144	19479221	+
GWHAAZE00000008	CDS	19479322	19479433	+
GWHAAZE00000008	CDS	19480025	19480109	+
GWHAAZE00000008	CDS	19480210	19480261	+
GWHAAZE00000008	CDS	19480348	19480409	+
GWHAAZE00000008	CDS	19480752	19480867	+
GWHAAZE00000008	CDS	19480986	19481107	+
GWHAAZE00000008	CDS	19481299	19481367	+
GWHAAZE00000008	CDS	19481530	19481592	+
GWHAAZE00000008	three_prime_UTR	19481593	19481734	+
GWHAAZE00000008	three_prime_UTR	19481983	19482056	+
GWHAAZE00000008	three_prime_UTR	19482640	19482688	+
GWHAAZE00000008	three_prime_UTR	19483127	19483206	+
GWHAAZE00000008	three_prime_UTR	19483911	19484175	+

Transcript Sequence
>GWHTAAZE027448 ATGACGAAAGAAGAAGATGAGAATGGAAGGTATGACATGTTAATCGATGGGCATGAGATTGAAAAGAGGCAAGATACTTCTGTTCCCGATGGATTCAACGCTAATTACCTTAGAGTTTATTATGGGCATAGAGAATCGTCTTACCTAAGGCCATTTTTTCTTGTGGCAGGAAAGCTTTTCCCACTTGATGATATATTCAAATGGATGTCTTATGGAAATGATGGAAAGCATCCTGCATGTGACCAGTCCTATTTTGGGCGTAGAGAATTTTCATTCACGTTGGACAATGACATATACCTGCGGTTTCAGTCTTTCGGCAGTGTAATTGAACTGGACAATGCTATTAAGGAGAAGTGTCCATTCAAAATAGATATTGGGCCCGTGTACAATGTTGATCCTGCCAAGAGGCATGCCTATTCACAAGCCGGTGACAACGTTTTCACTCCCGTGGAGAGGGAGCTAGTTTTTGATATAGATATGTCAGATTATGACGATGTTAGATATTGCTGCTCAGGAGCTGATGTTTGCTTGGATTGCTGGCCGTTGATGACAATTGCCATTAAAGTTCTTGATACCGCACTAAGAGATGATTTTGGATTCAATCACATTCTTTGGGTATACAGTGGCCGGCGTGGTGTCCACTGTTGGGTTTGTGATGGAAAGGCAAGAAGGTTGAATAATGAGCAAAGAGCAGCTATTACTGATTATTTTCGTGTGTACAAGGGCAACGACAATAGTCTTAAAAAGGTTTCTCTAGTGGGTCTTGCACTTCATCCGTTCCTGGCGAGATCTTATACTGACATTTTGAAAGATTTCTTTGAAGAGAAATTGCTTTGCAGTCAAAAGTTATTTTTAAGTGAAGATAGATATGAGAAAATATTGGAGATGATTCCAGATGAATCAATAACTTCAGAGCTTCGAGGAAAGTGGCAGGAGAACAGGCGTTCATCCAGTGCAAAAGAAGACATTAATGTTGTTCGATGGGAGCAACTAAAACATCTGCTTCAATCTGGGAAACATAAGGCACAAGGGCTTCGTAGGTGTGTTGAAGAGATTGTGTTCTCTTATGCATATCCTAGGCTTGATATGGAGGTTTCAAAACACATGAACCATTTGTTGAAGGCACCATTCTGTGTACACCCCAAAACAGGTTAGTTTCTCAAATGCTTGTCCCCTTTGAATTAAAAGTGATCACAATATTGGATCTCAAATTTGTGACTGACTGGCATAGTGCTCACAGTTAGCGAACAACAAATTCTTTTGAACAAATTTGTGATTGACTGGCATAGTGCTCACAGCCGTGTTTGTGTTCCTATCGATCCAAATTGTTGCGAGGAATTTGACCCAACAACTGTGCCAACCCTGTCGGAGCTTTTGGGAGAAATTAATATGGGAGGTTTAAGAGCTGAAGGCGATAATGATTGGGATAGAACCTCATTGGGAAGATCTGTCAGATATTTCAGAACAGCCTTCTTGCAGCCCCTGCTCAAGTCTTGCAAGGAGGAGATAGAAAGCTCGTATACTGCAAAGATTGAGCAGTCAAAAAACTCGCTCAATTGGTAGTCTCTCTTCTCCAAAGTTTACTTTCACCTTAAGATGCAAGTTTAAAATAATGTGACACTGCTAGTCCTGTAATTGTGATGTGTAATCACTTTTTGAGTTTCTTGTAGAAAATTTTACGACACGTTGAAAATGTAGAGGAATGATTTGCTAGCATTTTTTTTAATGGAATTCAATTATTCGTTTCAATTACCAATCAAATAGA

Network for GWHGAAZE027414

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01896.20	DNA_primase_S	156	384	3.90E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02684	PRI1	DNA replication	map03030

Gene Ontology

GO term	Ontology	Name
GO:0006269	biological_process	DNA replication, synthesis of RNA primer
GO:0003896	molecular_function	DNA primase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.901
	SRR3591706	second leaf	1.355
	SRR3591707	mature leaf	0.241
	SRR3591708	Shoot apex	12.285
	SRR3591709	Stem	1.569
	SRR3591710	White floral bud	0.179
	SRR3591711	White flower	0.282
	SRR3591712	Green floral bud	0.751
	SRR3591713	Yellow flower	0.059
SRP173429	SRR8316895	Juvenile bud stage	1.745
	SRR8316896	Juvenile bud stage	1.488
	SRR8316897	Juvenile bud stage	1.444
	SRR8316894	Third green stage	0.412
	SRR8316900	Third green stage	0.793
	SRR8316901	Third green stage	0.413
	SRR8316898	Complete white stage	0.043
	SRR8316899	Complete white stage	0.434
	SRR8316903	Complete white stage	0.028
	SRR8316902	Silver flowering stage	0.036
	SRR8316904	Silver flowering stage	0.027
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.084
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.014
SRP132670	SRR6706286	Control	0.418
	SRR6706287	Light intensity 50%	0.526
	SRR6706288	Light intensity 20%	0.484
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.904
	CNS0095593	Slightly white alabastrum(diploid) 2	0.948
	CNS0095594	Slightly white alabastrum(diploid) 3	0.805
	CNS0095595	Whole white alabastrum(diploid) 2	0.280
	CNS0095596	Whole white alabastrum(diploid) 3	0.238
	CNS0095597	Whole white alabastrum(diploid) 4	0.161
	CNS0095598	Silvery flower (diploied) 1	1.057
	CNS0095599	Silvery flower (diploied) 2	1.593
	CNS0095600	Silvery flower (diploied) 3	0.096
	CNS0095601	Golden flower (diploid) 1	0.276
	CNS0095602	Golden flower (diploid) 2	0.082
	CNS0095603	Golden flower (diploid) 3	0.103
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.527
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.599
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.616
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.572
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.606
	CNS0095610	Silvery flower (tetraploid) 1	0.057
	CNS0095611	Silvery flower (tetraploid) 2	0.106
	CNS0095612	Silvery flower (tetraploid) 3	0.216
	CNS0095613	Golden flower (tetraploid) 1	0.109
	CNS0095614	Golden flower (tetraploid) 2	0.110
	CNS0095615	Golden flower (tetraploid) 3	0.038
CRA001975	CRR073297	Stem 1	1.930
	CRR073298	Stem 2	0.909
	CRR073299	Stem 3	1.048
	CRR073300	Leaf 1	0.209
	CRR073301	Leaf 2	0.112
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.207
	CRR073304	Juvenile bud 2	0.001
	CRR073305	Juvenile bud 3	0.158
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.001
	CRR073309	Second white 1	0.004
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.002
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.052
	CRR073316	Gold flowering 2	0.030
	CRR073317	Gold flowering 3	0.243
	CRR073318	Tawny withering 1	0.548
	CRR073319	Tawny withering 2	1.480
	CRR073320	Tawny withering 3	1.080