Gene detail

Detail information of GWHGAAZE027417

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006448534.1	0	hypothetical protein CICLE_v10015030mg [Citrus clementina]
COG	YP_529070.1	1E-84	putative retaining b-glycosidase
Swissprot	tr\|Q9FIW4\|BGL42_ARATH	2E-159	Beta-glucosidase 42
trEMBL	tr\|V4W6M9\|V4W6M9_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR61774.1}
TAIR10	AT5G36890.1	5E-130	beta glucosidase 42

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	19544318	19551669	+
GWHAAZE00000008	mRNA	19544318	19551669	+
GWHAAZE00000008	exon	19544318	19544444	+
GWHAAZE00000008	exon	19545998	19546072	+
GWHAAZE00000008	exon	19547356	19547558	+
GWHAAZE00000008	exon	19548801	19549029	+
GWHAAZE00000008	exon	19549128	19549162	+
GWHAAZE00000008	exon	19549240	19549378	+
GWHAAZE00000008	exon	19549770	19549878	+
GWHAAZE00000008	exon	19551477	19551669	+
GWHAAZE00000008	CDS	19544318	19544444	+
GWHAAZE00000008	CDS	19545998	19546072	+
GWHAAZE00000008	CDS	19547356	19547558	+
GWHAAZE00000008	CDS	19548801	19549029	+
GWHAAZE00000008	CDS	19549128	19549162	+
GWHAAZE00000008	CDS	19549240	19549378	+
GWHAAZE00000008	CDS	19549770	19549878	+
GWHAAZE00000008	CDS	19551477	19551669	+

Transcript Sequence
>GWHTAAZE027451 ATGAATGTACACCTGCTCTCATCATTCTTTATTCAAACTCCTCAAATACAGGAAGATATTGACCTTATTTCCAAGTTGGGATTTGGTGCTTATCGTTTTTCTCTGTCATGGTCTCGTATATTTCCTGATGGTTTGGGAACTAAAGTCAATGAGCAAGGGATCGCACACTACAATAATATCATTGATACTCTTTTGGATAAGGAGACTTGCTTTGCCAGTTTTGGTGACAGAGTGAAGAAATGGATTACTATTAATGAGCCTCTGCAAACTGCAGTGAATGGATATTGTACTGGTATATATGCCCCTGGAAGACGTGAACATTCATTGACTGAACCATATTTGGTTGCGCACCATCAGCTCTTGGCACATGCTGAAGCTGTTTCCATTTACAGAAACAATTTCAAGTTCCGAATAAGGTATTTGGATCCAATATTTTATGGAGACTATCCTGAAGCTATGCGGGAAAGACTTGGAGACCGGCTTCCAAAGTTCTCTCAGAAAGATAAAGAGCTACTCCGTGATTCAGTAGACTTTCTTGGTTTGAATCACTATACCTCAAGGTTTGTTACTCATGGAGGAAGAGTGAACCAACAAGACAATGATTTTTATCAAGCTCAAGAGGTGGAGAGAATAGCTGAATGGGAAGGAGGGGAGGTAATTGGTGAGAAGTTTGTTAATCAAAGATTTTATTATTATGCATGGCAGGCAGCATCACCGTGGCTTTACGTTGTTCCATGGGGTATACGCAAAGTTCTCAATTACATAGCAGAGAGATACAATAATCCCCCAATATACATTACTGAGAATGGTATGGACGATGAGGACAATGGCACATCCCAGATCCACGACATGTTGGATGACAAATTGAGAGTTTCTTACTTTAAGGGGTACCTTGCTGCTGTTGCTCAGGCAATTAAGGATGGAACGGATGTGAGGGGATACTTTGCTTGGTCATTAATGGACAACTTTGAGTGGCAGCTCGGGTACACCAAGCGTTTTGGTTTGATTTACGTTGACTTCAACAACAATTCTCGCCACTTTAAGTCGTCGGCCTATTGGTTCTTGCGATTCTTGAAAGGCGAACAAGACAAGAATGGCAAACAAGAGTAG

Network for GWHGAAZE027417

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.19	Glyco_hydro_1	15	67	2.70E-16
PF00232.19	Glyco_hydro_1	68	133	3.50E-17
PF00232.19	Glyco_hydro_1	140	359	2.40E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01188	E3.2.1.21	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.905
	SRR3591706	second leaf	10.923
	SRR3591707	mature leaf	18.225
	SRR3591708	Shoot apex	13.312
	SRR3591709	Stem	20.531
	SRR3591710	White floral bud	16.459
	SRR3591711	White flower	21.645
	SRR3591712	Green floral bud	11.273
	SRR3591713	Yellow flower	13.567
SRP173429	SRR8316895	Juvenile bud stage	7.554
	SRR8316896	Juvenile bud stage	11.938
	SRR8316897	Juvenile bud stage	6.965
	SRR8316894	Third green stage	4.370
	SRR8316900	Third green stage	10.794
	SRR8316901	Third green stage	10.039
	SRR8316898	Complete white stage	3.280
	SRR8316899	Complete white stage	9.949
	SRR8316903	Complete white stage	7.217
	SRR8316902	Silver flowering stage	6.534
	SRR8316904	Silver flowering stage	7.176
	SRR8316905	Silver flowering stage	2.679
	SRR8316906	Gold flowering stage	7.663
	SRR8316907	Gold flowering stage	7.862
	SRR8316908	Gold flowering stage	14.038
SRP132670	SRR6706286	Control	6.664
	SRR6706287	Light intensity 50%	9.032
	SRR6706288	Light intensity 20%	8.936
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.435
	CNS0095593	Slightly white alabastrum(diploid) 2	9.984
	CNS0095594	Slightly white alabastrum(diploid) 3	8.774
	CNS0095595	Whole white alabastrum(diploid) 2	8.189
	CNS0095596	Whole white alabastrum(diploid) 3	6.984
	CNS0095597	Whole white alabastrum(diploid) 4	7.846
	CNS0095598	Silvery flower (diploied) 1	15.370
	CNS0095599	Silvery flower (diploied) 2	13.165
	CNS0095600	Silvery flower (diploied) 3	14.996
	CNS0095601	Golden flower (diploid) 1	12.849
	CNS0095602	Golden flower (diploid) 2	12.907
	CNS0095603	Golden flower (diploid) 3	10.976
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.617
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.671
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.187
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.771
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.722
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.064
	CNS0095610	Silvery flower (tetraploid) 1	29.379
	CNS0095611	Silvery flower (tetraploid) 2	27.811
	CNS0095612	Silvery flower (tetraploid) 3	23.199
	CNS0095613	Golden flower (tetraploid) 1	10.804
	CNS0095614	Golden flower (tetraploid) 2	19.173
	CNS0095615	Golden flower (tetraploid) 3	9.004
CRA001975	CRR073297	Stem 1	10.621
	CRR073298	Stem 2	7.007
	CRR073299	Stem 3	5.641
	CRR073300	Leaf 1	7.960
	CRR073301	Leaf 2	9.832
	CRR073302	Leaf 3	8.016
	CRR073303	Juvenile bud 1	8.765
	CRR073304	Juvenile bud 2	6.415
	CRR073305	Juvenile bud 3	10.517
	CRR073306	Third green 1	6.791
	CRR073307	Third green 2	5.343
	CRR073308	Third green 3	5.426
	CRR073309	Second white 1	5.727
	CRR073310	Second white 2	7.236
	CRR073311	Second white 3	3.120
	CRR073312	Silver flowering 1	1.092
	CRR073313	Silver flowering 2	2.177
	CRR073314	Silver flowering 3	2.838
	CRR073315	Gold flowering 1	5.243
	CRR073316	Gold flowering 2	8.837
	CRR073317	Gold flowering 3	6.147
	CRR073318	Tawny withering 1	12.313
	CRR073319	Tawny withering 2	8.978
	CRR073320	Tawny withering 3	7.116