Gene detail

Detail information of GWHGAAZE027427

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648926.1	0	PREDICTED: uncharacterized protein LOC100266835 isoform X1 [Vitis vinifera]
COG	YP_005327152.1	3E-11	Thiaminase-2
trEMBL	tr\|F6HYH8\|F6HYH8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59742.1}
TAIR10	AT5G32470.1	9E-171	Haem oxygenase-like, multi-helical

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	19689061	19692676	+
GWHAAZE00000008	mRNA	19689061	19692676	+
GWHAAZE00000008	exon	19689061	19689357	+
GWHAAZE00000008	exon	19689448	19689871	+
GWHAAZE00000008	exon	19690007	19690273	+
GWHAAZE00000008	exon	19692255	19692676	+
GWHAAZE00000008	CDS	19689061	19689357	+
GWHAAZE00000008	CDS	19689448	19689871	+
GWHAAZE00000008	CDS	19690007	19690273	+
GWHAAZE00000008	CDS	19692255	19692676	+

Transcript Sequence
>GWHTAAZE027461 ATGCAGGGATGGGTTTCAGACCTGGTCAAGGAGAATACTCTGAACTCTGCAACATTGAAGTACACAGATTTCTTGTTGGCAACAGCCTCAGGGAAGGTTGAAGGAGTAAAAGGCGCTGGCAAACTTGCTACTCCTTTTGAGAAAACAAAACTTGCGGCTTACACACTAGGTACAATGATGCCCTGCATGAGGCTTTATGCCTTTCTGGGTAAGGAGCTCCAGTCACTTCTAGATAGTAATGAATGTAGTCCCTTTTACAAGAAGTGGATCGACAATTATTCATCAGAAAGTTTTCAGGCATCAACCCTGCAAACTGAGGATTTGCTGGATAAGTTAAGTGTTTCGTTGACAGGTGAAGAGCTTGACGTAATTGAAAAGCTTTATTATCAAGCGATGAAACTTGAGATAGAGTTTTTCTCTGCTCAGCCACTTGTTCAGCAAACCGTTTTTCCTCTGTCAAAAGTGCTCAACCCCGCAGAACATCGTCTTATGATATTTTCTGCTTTTGATTTGACGTGCACTGTTGTTGATTCATCTGCCATTTTGGCAGAGATTGCAATACTAACAGCACCAAAATCTGATCATCATAGTAATCAACTGGAAAACCAAATTGCTCGGATTCCTTCAGCTGCTGACCTGAGAAATACATGGGGAGTTCTTTCAAGACAGTATACAGAAGAGTATGAGCAGTGCATTGAGACCATTTTGCTCACTGAGAAAGCGGAGAAATTTAACTATGAGGGTCTGAGTAAAGCAGTTGAGCAACTCTCAGATTTTGAGAGAAGGGCAAATGCAAGAGTGATCGAATCTGGGGTACTTAAAGGCCTGAATCTTGATAATATAAGACGTGCCGGGGAACGCCTTGTTCTCCAAGATGGTTCCAGATGTTTCTTTCAGAGTATCATAAAGAACGAAAAATTTAATGCAAATGTCCATGTCCTTTCCTATTGTTGGTGTGGCGATCTGATTAGGTCGGCTCTTTCAACAGGTGGATTACATGTTGTGAACGTACATGCAAATGAATTCTCCTATAGAGAATCCACATCCACGGGTGAAATTACTAAAAAGGTTGAGACCCCCATTGACAAGGTTCAAAAGTTTAGTCATGTCTTACAAAACTGCAAAAACGACAGAAAGAATTTGACCATTTACATCGGGCACTCAGTGGGTGACTTACTTTGTCTGCTTAAGGCTGATGTAGGCATTGTTATCAGTTCAAGTTCAAGCCTAAGGAGAGTAGGGACTCATTTCGGGGTTTCTTTTATTCCTTTATTTCCAGGTTTGGTTAAGAAGCAGAAAGAATATGTTGATGAAGGCAGTAGTAGTTGGTCTTCTAGTTGGAAGGGACTATCTGGCATTCTTTATACTGTTTCTAGTTGGGTTGAAATACAAGCTTTCGTTTTGGGTTAA

Network for GWHGAAZE027427

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03070.17	TENA_THI-4	55	140	7.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22911	TH2	Metabolic pathways	map01100
K22911	TH2	Thiamine metabolism	map00730

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.552
	SRR3591706	second leaf	3.439
	SRR3591707	mature leaf	2.603
	SRR3591708	Shoot apex	7.039
	SRR3591709	Stem	4.575
	SRR3591710	White floral bud	1.872
	SRR3591711	White flower	2.727
	SRR3591712	Green floral bud	5.465
	SRR3591713	Yellow flower	0.717
SRP173429	SRR8316895	Juvenile bud stage	4.162
	SRR8316896	Juvenile bud stage	6.590
	SRR8316897	Juvenile bud stage	2.855
	SRR8316894	Third green stage	3.279
	SRR8316900	Third green stage	8.010
	SRR8316901	Third green stage	6.781
	SRR8316898	Complete white stage	1.306
	SRR8316899	Complete white stage	9.035
	SRR8316903	Complete white stage	1.859
	SRR8316902	Silver flowering stage	0.585
	SRR8316904	Silver flowering stage	0.856
	SRR8316905	Silver flowering stage	0.340
	SRR8316906	Gold flowering stage	0.880
	SRR8316907	Gold flowering stage	0.801
	SRR8316908	Gold flowering stage	1.223
SRP132670	SRR6706286	Control	0.772
	SRR6706287	Light intensity 50%	1.396
	SRR6706288	Light intensity 20%	1.535
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.348
	CNS0095593	Slightly white alabastrum(diploid) 2	4.636
	CNS0095594	Slightly white alabastrum(diploid) 3	6.489
	CNS0095595	Whole white alabastrum(diploid) 2	4.985
	CNS0095596	Whole white alabastrum(diploid) 3	4.190
	CNS0095597	Whole white alabastrum(diploid) 4	3.763
	CNS0095598	Silvery flower (diploied) 1	2.874
	CNS0095599	Silvery flower (diploied) 2	3.317
	CNS0095600	Silvery flower (diploied) 3	1.937
	CNS0095601	Golden flower (diploid) 1	1.992
	CNS0095602	Golden flower (diploid) 2	1.414
	CNS0095603	Golden flower (diploid) 3	1.673
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.011
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.549
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.350
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.931
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.159
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.828
	CNS0095610	Silvery flower (tetraploid) 1	2.502
	CNS0095611	Silvery flower (tetraploid) 2	2.577
	CNS0095612	Silvery flower (tetraploid) 3	2.085
	CNS0095613	Golden flower (tetraploid) 1	0.895
	CNS0095614	Golden flower (tetraploid) 2	1.682
	CNS0095615	Golden flower (tetraploid) 3	0.461
CRA001975	CRR073297	Stem 1	2.705
	CRR073298	Stem 2	2.192
	CRR073299	Stem 3	1.088
	CRR073300	Leaf 1	2.511
	CRR073301	Leaf 2	1.668
	CRR073302	Leaf 3	1.503
	CRR073303	Juvenile bud 1	1.498
	CRR073304	Juvenile bud 2	0.371
	CRR073305	Juvenile bud 3	2.263
	CRR073306	Third green 1	0.045
	CRR073307	Third green 2	0.044
	CRR073308	Third green 3	0.047
	CRR073309	Second white 1	0.052
	CRR073310	Second white 2	0.043
	CRR073311	Second white 3	0.027
	CRR073312	Silver flowering 1	0.141
	CRR073313	Silver flowering 2	0.076
	CRR073314	Silver flowering 3	0.100
	CRR073315	Gold flowering 1	0.450
	CRR073316	Gold flowering 2	0.793
	CRR073317	Gold flowering 3	0.583
	CRR073318	Tawny withering 1	1.126
	CRR073319	Tawny withering 2	0.911
	CRR073320	Tawny withering 3	1.705