Detail information of GWHGAAZE027430


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011077144.10PREDICTED: phospholipase A(1) LCAT3-like [Sesamum indicum]
COGYP_002774995.16E-19esterase
Swissprottr|Q93V61|LCAT3_ARATH3E-171Phospholipase A(1) LCAT3
trEMBLtr|Q71LW1|Q71LW1_TOBAC0Phospholipase A1 {ECO:0000313|EMBL:AAQ05032.1}
TAIR10AT3G03310.19E-131lecithin:cholesterol acyltransferase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1972865219735888-
GWHAAZE00000008mRNA1972865219735888-
GWHAAZE00000008exon1972865219728678-
GWHAAZE00000008exon1972943519729680-
GWHAAZE00000008exon1973059519730774-
GWHAAZE00000008exon1973132419731424-
GWHAAZE00000008exon1973420519734256-
GWHAAZE00000008exon1973435219734487-
GWHAAZE00000008exon1973471719734844-
GWHAAZE00000008exon1973537919735493-
GWHAAZE00000008exon1973568919735888-
GWHAAZE00000008CDS1973568919735888-
GWHAAZE00000008CDS1973537919735493-
GWHAAZE00000008CDS1973471719734844-
GWHAAZE00000008CDS1973435219734487-
GWHAAZE00000008CDS1973420519734256-
GWHAAZE00000008CDS1973132419731424-
GWHAAZE00000008CDS1973059519730774-
GWHAAZE00000008CDS1972943519729680-
GWHAAZE00000008CDS1972865219728678-
Transcript Sequence

Network for GWHGAAZE027430

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02450.16LCAT812641.80E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K22389LCAT3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0006629biological_processlipid metabolic process
GO:0008374molecular_functionO-acyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.120
SRR3591706second leaf18.919
SRR3591707mature leaf18.034
SRR3591708Shoot apex34.001
SRR3591709Stem16.760
SRR3591710White floral bud11.625
SRR3591711White flower29.244
SRR3591712Green floral bud16.496
SRR3591713Yellow flower101.370
SRP173429 SRR8316895Juvenile bud stage 23.469
SRR8316896Juvenile bud stage 28.576
SRR8316897Juvenile bud stage 15.353
SRR8316894Third green stage 10.340
SRR8316900Third green stage 36.470
SRR8316901Third green stage 35.063
SRR8316898Complete white stage 10.918
SRR8316899Complete white stage 39.419
SRR8316903Complete white stage 15.625
SRR8316902Silver flowering stage8.854
SRR8316904Silver flowering stage11.969
SRR8316905Silver flowering stage6.009
SRR8316906Gold flowering stage 21.494
SRR8316907Gold flowering stage 20.432
SRR8316908Gold flowering stage 22.538
SRP132670SRR6706286Control28.681
SRR6706287Light intensity 50%28.042
SRR6706288Light intensity 20%30.512
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.459
CNS0095593Slightly white alabastrum(diploid) 216.264
CNS0095594Slightly white alabastrum(diploid) 320.620
CNS0095595Whole white alabastrum(diploid) 217.894
CNS0095596Whole white alabastrum(diploid) 315.821
CNS0095597Whole white alabastrum(diploid) 413.860
CNS0095598Silvery flower (diploied) 138.733
CNS0095599Silvery flower (diploied) 231.285
CNS0095600Silvery flower (diploied) 332.245
CNS0095601Golden flower (diploid) 134.916
CNS0095602Golden flower (diploid) 258.439
CNS0095603Golden flower (diploid) 353.939
CNS0095604Slightly white alabastrum(tetraploid) 120.344
CNS0095605Slightly white alabastrum(tetraploid) 219.421
CNS0095606Slightly white alabastrum(tetraploid) 349.729
CNS0095607Whole white alabastrum(tetraploid) 112.090
CNS0095608Whole white alabastrum(tetraploid) 210.300
CNS0095609Whole white alabastrum(tetraploid) 338.361
CNS0095610Silvery flower (tetraploid) 149.164
CNS0095611Silvery flower (tetraploid) 259.586
CNS0095612Silvery flower (tetraploid) 323.942
CNS0095613Golden flower (tetraploid) 147.716
CNS0095614Golden flower (tetraploid) 263.104
CNS0095615Golden flower (tetraploid) 364.936
CRA001975CRR073297Stem 126.454
CRR073298Stem 227.348
CRR073299Stem 321.922
CRR073300Leaf 131.164
CRR073301Leaf 225.759
CRR073302Leaf 331.484
CRR073303Juvenile bud 124.260
CRR073304Juvenile bud 225.626
CRR073305Juvenile bud 316.084
CRR073306Third green 12.568
CRR073307Third green 21.857
CRR073308Third green 32.303
CRR073309Second white 12.819
CRR073310Second white 22.813
CRR073311Second white 33.357
CRR073312Silver flowering 15.176
CRR073313Silver flowering 24.125
CRR073314Silver flowering 34.146
CRR073315Gold flowering 110.400
CRR073316Gold flowering 215.745
CRR073317Gold flowering 311.079
CRR073318Tawny withering 118.546
CRR073319Tawny withering 211.956
CRR073320Tawny withering 314.046