Gene detail

Detail information of GWHGAAZE027465

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011101012.1	0	PREDICTED: protein tipD-like [Sesamum indicum]
COG	NP_488874.1	9E-23	hypothetical protein all4834
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	8E-10	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|M1AVX1\|M1AVX1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400031606}
TAIR10	AT5G53500.1	2E-148	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20260974	20264791	+
GWHAAZE00000008	mRNA	20260974	20264791	+
GWHAAZE00000008	exon	20260974	20262134	+
GWHAAZE00000008	exon	20262396	20262486	+
GWHAAZE00000008	exon	20262566	20262723	+
GWHAAZE00000008	exon	20262809	20262860	+
GWHAAZE00000008	exon	20263361	20263440	+
GWHAAZE00000008	exon	20263549	20263642	+
GWHAAZE00000008	exon	20263996	20264791	+
GWHAAZE00000008	CDS	20260974	20262134	+
GWHAAZE00000008	CDS	20262396	20262486	+
GWHAAZE00000008	CDS	20262566	20262723	+
GWHAAZE00000008	CDS	20262809	20262860	+
GWHAAZE00000008	CDS	20263361	20263440	+
GWHAAZE00000008	CDS	20263549	20263642	+
GWHAAZE00000008	CDS	20263996	20264564	+
GWHAAZE00000008	three_prime_UTR	20264565	20264791	+

Transcript Sequence
>GWHTAAZE027499 ATGGGAAGTCATTTTGAAGTGGGTGAAGAACAATTTTTCGATACACGCGATGAGATTACTTCCGTATCTGATTTGGGTTCGGATTTATCCGAGGATTGTTCTTATCCAGGGTTTGTAAATTATGGTTCAAATGGTTTTGGAGATGAATTTATGACTATGGACCTTGAAAGTGTTCATGAACGACGTGAGAGGTTTCAAAAATGGATGGATTTTAGTTTAGATTTGTATCCAAGCGATGGAGATGAACCGGAAAATTTATGTAGAGATGAAATTAGAAAGGGAATTCAAAGAATTAGGGCGAACAGTGAACCTATTCAGGCATATTCAGAATTTGAGAGCCGGGTTTTATCGAGTCAGTCTTCTCCGTCTTGCCAGTCCATTGAAGCTCATGAACTTGTAGAAGATGGGGCTCCAGCAGACAATCTTATGACTGAAATAATGAACTCAAATGACAATACAGACTTTGTTATGAATCAAACAATGAACAGATTATATGCACATGACTCAAATCAAGATTTAGTGGTTGAAGAGTTTCAAAGAACTTTTGTATTATCTTCTTTTGATGATCAATTATTGCCAAAGGAAGATGAGACCAGTAACGTGTTGGATAAGAGGAAGAAAGCGAAGAAGGGTTGGCTTCAAAAGTTAAGTGTTATGGGAAGACTTGGGCATAAGCAAGAGGTAAACAAAAATTCCAATTCCGATGACATAAAATCGAAGGCTGGGGGTAATATTCATAAAGTTCGTGTTCATACACACAAGAAGCGGTTGAAGGAATTATCCTCTGTTTATATTGGGCAAGACTTTCCTGCACATAAAGGTTCAATCTTGGCCATGAAGTTCAGTCCCGATGGCCAGTATTTAGCGAGTGGCGGGGAAGATAGTATAGTGCGTGTTTGGAAGGTGATTGAAGACGAGAGCGAAAGCATATTTAACATTCAAAATAGTGATCCTTCATGTTTATACTTCTCGTTGAATCATCTCTCCAAATTAGCTCCTCTAAATGTGGATAAAGAGAAGAAGACCAGTATGTTGAAGAGATCATCAGAATCGGCTTGTGTCATTTTCCCACCTAAGGTATTTCGGTTATTGGAGAAACCTGTACATGAGTTTCATGGGCACACCGATGACATCTTGGCTCTCTCTTGGTCTAAGAATGGGCATCTTCTTTCGTCCTCTATTGATAAAACTGCTCGCATATGGCAAGTAGGACATGAAGATTGCCTTGGAGTTTTTTCTCATAATAACTACGTGACCTGTGTGGAATTCAATCCTGTGGATGATAACTATTTCATTAGCGGTTCAATAGATGGAAAAGTGAGGATATGGGGAGTGCGAGGGTGTCAGGTTGTTGATTGGATTGATGTAAGAGAAATAGTTTCCGCTGTGTGCTATTGTCCTGATGGAAAGGGAGGCATTGTGGGCACCATGGATGGAAACTGCCGATTCTATGATATCATAGATAATCGTTTGGAAAAGGGCGCCCAAATATGCTTACAGGGGAAAAAGAAGTTGCCCGGAAAGAGGATAACTGGATTTCAGTTCTCTCCAAGCGACCCGAGTAAAGTGATGGTCACTTCTGCCGATTCACAAGTTAGAATACTTTGTGGGGTCAATGTGGTTTGCAAATTCAAGGGCGTTCGAAGTTCGGGAAGCCAGCTATCGGCATCTTTTACATCGGATGGGAAGCATATAATCTCAGCTACAGAGGATTCAAATGTTCACACATGGAACTACATTAACCAAGATCGTATTTATTCCCGACCAAAAAACATTTGTTCGTGCGAAACTTTCTCATCCCACAACGCCTCGATAGCCATACCTTGGTGTGGCAATAATAGCATTTCTCAGACACTCCCGTCCCCAAAACTATCCGGGGACAATCTTCCCCGTACTATCTTGCAAAACGGGCATTTTGATGACAACTTTCTCAAAATGCCCTTATCTTCTCCCGATTGTTTCCGCGGGTTTTTCTTGGAGAATTTGCATAGAGGAACAGCAACGTGGCCTGAGGAGAAACTACCCAAGTCACCTCATCAAGTGGGGGCATCGCCGTCAATTTGCAAATCTGAGTACAAGTTCTTGAAGAATGCCTACCAGAGCACATTCAGTTCTCCTCATATGTGGGGCCATGTGATCATAACTGCCGGCTGGGATGGACGTATCAGATCGTTCCTCAATTACGGCTTGCCTATTCGTACCTAAAAACCCGAGTAGGCATTTGAAGTGTAATGTAGATGGAAATTTTTAGGATGGGTGGATCCTTTTATGGATTACAATATAATGTTGTACTATATATATATATAATCGAGAGGAGAGGTAATACATGTAGTTATTTATACACAATGCCTGGCCAATTGTCAAGAGTGGAGGCTGGAATTTGTTTTTGGTACTGGATTAGTAGGAAGCTTTCCAGTTATATAATAACAACA

Network for GWHGAAZE027465

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	269	301	2.90E-07
PF00400.33	WD40	366	401	1.50E-06
PF00400.33	WD40	407	443	5.90E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.081
	SRR3591706	second leaf	16.309
	SRR3591707	mature leaf	30.319
	SRR3591708	Shoot apex	17.071
	SRR3591709	Stem	32.895
	SRR3591710	White floral bud	32.627
	SRR3591711	White flower	44.771
	SRR3591712	Green floral bud	17.450
	SRR3591713	Yellow flower	35.997
SRP173429	SRR8316895	Juvenile bud stage	13.205
	SRR8316896	Juvenile bud stage	12.709
	SRR8316897	Juvenile bud stage	9.421
	SRR8316894	Third green stage	5.692
	SRR8316900	Third green stage	13.372
	SRR8316901	Third green stage	16.044
	SRR8316898	Complete white stage	8.459
	SRR8316899	Complete white stage	34.042
	SRR8316903	Complete white stage	14.498
	SRR8316902	Silver flowering stage	12.199
	SRR8316904	Silver flowering stage	16.770
	SRR8316905	Silver flowering stage	6.418
	SRR8316906	Gold flowering stage	25.448
	SRR8316907	Gold flowering stage	22.423
	SRR8316908	Gold flowering stage	32.437
SRP132670	SRR6706286	Control	9.730
	SRR6706287	Light intensity 50%	11.262
	SRR6706288	Light intensity 20%	11.180
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.910
	CNS0095593	Slightly white alabastrum(diploid) 2	14.178
	CNS0095594	Slightly white alabastrum(diploid) 3	15.011
	CNS0095595	Whole white alabastrum(diploid) 2	13.330
	CNS0095596	Whole white alabastrum(diploid) 3	8.740
	CNS0095597	Whole white alabastrum(diploid) 4	10.759
	CNS0095598	Silvery flower (diploied) 1	26.561
	CNS0095599	Silvery flower (diploied) 2	21.697
	CNS0095600	Silvery flower (diploied) 3	30.627
	CNS0095601	Golden flower (diploid) 1	24.227
	CNS0095602	Golden flower (diploid) 2	33.652
	CNS0095603	Golden flower (diploid) 3	32.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.016
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.841
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.476
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.750
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.579
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.550
	CNS0095610	Silvery flower (tetraploid) 1	33.857
	CNS0095611	Silvery flower (tetraploid) 2	31.896
	CNS0095612	Silvery flower (tetraploid) 3	40.821
	CNS0095613	Golden flower (tetraploid) 1	29.730
	CNS0095614	Golden flower (tetraploid) 2	32.270
	CNS0095615	Golden flower (tetraploid) 3	44.804
CRA001975	CRR073297	Stem 1	9.760
	CRR073298	Stem 2	10.828
	CRR073299	Stem 3	7.246
	CRR073300	Leaf 1	10.374
	CRR073301	Leaf 2	10.325
	CRR073302	Leaf 3	6.941
	CRR073303	Juvenile bud 1	7.183
	CRR073304	Juvenile bud 2	4.822
	CRR073305	Juvenile bud 3	9.266
	CRR073306	Third green 1	4.616
	CRR073307	Third green 2	5.182
	CRR073308	Third green 3	6.770
	CRR073309	Second white 1	5.283
	CRR073310	Second white 2	6.599
	CRR073311	Second white 3	5.511
	CRR073312	Silver flowering 1	6.396
	CRR073313	Silver flowering 2	3.927
	CRR073314	Silver flowering 3	5.939
	CRR073315	Gold flowering 1	6.060
	CRR073316	Gold flowering 2	10.002
	CRR073317	Gold flowering 3	4.507
	CRR073318	Tawny withering 1	11.035
	CRR073319	Tawny withering 2	19.007
	CRR073320	Tawny withering 3	11.096