Gene detail

Detail information of GWHGAAZE027467

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12200.1	5.1322E-126	unnamed protein product [Coffea canephora]
COG	YP_004316487.1	2E-38	alpha,alpha-trehalase
Swissprot	tr\|Q9FWC1\|TRE_ORYSJ	5E-102	Probable trehalase
trEMBL	tr\|A0A068UUM1\|A0A068UUM1_COFCA	2E-126	Trehalase {ECO:0000256\|RuleBase:RU361180}
TAIR10	AT4G24040.1	3E-73	trehalase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20301336	20312223	-
GWHAAZE00000008	mRNA	20301336	20312223	-
GWHAAZE00000008	exon	20301336	20301422	-
GWHAAZE00000008	exon	20301797	20302010	-
GWHAAZE00000008	exon	20302335	20302434	-
GWHAAZE00000008	exon	20303010	20303097	-
GWHAAZE00000008	exon	20303268	20303438	-
GWHAAZE00000008	exon	20303522	20303594	-
GWHAAZE00000008	exon	20305152	20305271	-
GWHAAZE00000008	exon	20310055	20310559	-
GWHAAZE00000008	exon	20312171	20312223	-
GWHAAZE00000008	five_prime_UTR	20312171	20312223	-
GWHAAZE00000008	five_prime_UTR	20310558	20310559	-
GWHAAZE00000008	CDS	20310055	20310557	-
GWHAAZE00000008	CDS	20305152	20305271	-
GWHAAZE00000008	CDS	20303522	20303594	-
GWHAAZE00000008	CDS	20303268	20303438	-
GWHAAZE00000008	CDS	20303010	20303097	-
GWHAAZE00000008	CDS	20302335	20302434	-
GWHAAZE00000008	CDS	20301797	20302010	-
GWHAAZE00000008	CDS	20301336	20301422	-

Transcript Sequence
>GWHTAAZE027501 TAAAAAAAAGGGAGAAAGTTTCTTCCAAGTTTCAGGAATTCATCACTCTCCAGCCATGGCAAAAGACTCTGGACCAGTAGTACCCACAACTCCACTAGTCGAATTCCTTGAACAAATCCAACAAACCGCTCTATCAACATTCGGCCACAAAGGATTCGACCCCAAACTCTACGTTGACATGTCGTTGAAATTCGATCTGTCAACAACCAATGAAGCGTTTAAAAATCTGAAGAGGACTGAGAATGGGTCTGTTTCGGTGAAGGATTTTGATGGATTTGTGAACAAGTATTTGAATGGCGCTGGTGAAGATTTAGTTTATGTTGAACCGGTGGATTTTGTGGCTGAACCGGAGGGATTTTTGGTCAAAGTGAAAAAACCGGAGGCGAGGGCTTGGGCATTGGAGGTGCATTCGCTTTGGAAGAATTTGAGCCGGAAAGTGGCGGACCGGGTTTTGGAGAGGCCGGAGCTGTACACTTTGCTTCCTTTGAAAGAACCGGTGATGATACCCGGTTCACGGTTTCGTGAAGTTTATTATTGGGATTCCTACTGGGTAATCAGGGGTTTGTTAGCAAGCAAAATGTACGAGACTGCAAAGGGGATTGTGACTAATCTCATTTCCCTGATAGACGAATTTGGCTATGTTCTTAATGGTGCAAGGGCATATTACACAAATAGAAGGAATGGATCTGATCTAACGACATTGACTACAACATCAATTATACCTGTAGATTTGAATGTCTTCATACTTAAGATGGAACTTGATATAGCGTTCTTGGCAAATGTTACCGGGGAGAGTAGCACTTCCAAGCAATTTACGGAAGCGGCCCATGCAAGAAAAATGGCAATAAACTCTGTGTTTTGGAACGCTGCAAAGGGCCAATGGTTCGATTACTGGCTTAAAGCTAACACTACTACGTCCAAGGATGTTTTCAAGTGGGAGGCTTTGAACCAAAATACGAATGTATTTGCCTCAAATTACGCTCCCCTGTGGATTCAATTGTTCAACACAGATGGTACATTGGTGGATACGGTTGCTCAAAGCTTTCTAAGTTCAGGCCTGCTCCGCCCTGCTGGGATTGCAACTTCTTTGACAAATTCAGGAGAACAGTGGGATTTTCCAAATGGTTGGGCCCCACTTCAACACATGATTGTTGAAGGTCTGTCGAAGTCAGCATCCAAAGAAGCAAGGTCATTGGGAGAAGATATTGCCATGAGGTGGATCAGGACCAATTACGCTACTTTCAACGAAACTGGTACAATGCACGAAAAATATGATGTTGATAAATGCGGAGCCTTTGGAGGCGGTGGCGAATATGTACCCCAGACGGGTTTTGGGTGGTCAAATGGAGTTGTATTGGCATTCTTGGAGGAGTTTGGTTGGCCTCGAGATGAGAAGCTTGGCTGCCTGTGA

Network for GWHGAAZE027467

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01204.19	Trehalase	35	207	7.80E-52
PF01204.19	Trehalase	210	441	1.10E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01194	TREH, treA, treF	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005991	biological_process	trehalose metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004555	molecular_function	alpha,alpha-trehalase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.667
	SRR3591706	second leaf	28.013
	SRR3591707	mature leaf	30.975
	SRR3591708	Shoot apex	27.152
	SRR3591709	Stem	37.474
	SRR3591710	White floral bud	9.380
	SRR3591711	White flower	9.218
	SRR3591712	Green floral bud	9.568
	SRR3591713	Yellow flower	5.438
SRP173429	SRR8316895	Juvenile bud stage	16.692
	SRR8316896	Juvenile bud stage	19.502
	SRR8316897	Juvenile bud stage	4.183
	SRR8316894	Third green stage	7.897
	SRR8316900	Third green stage	19.035
	SRR8316901	Third green stage	17.898
	SRR8316898	Complete white stage	6.929
	SRR8316899	Complete white stage	26.590
	SRR8316903	Complete white stage	10.509
	SRR8316902	Silver flowering stage	4.189
	SRR8316904	Silver flowering stage	7.577
	SRR8316905	Silver flowering stage	4.246
	SRR8316906	Gold flowering stage	7.156
	SRR8316907	Gold flowering stage	8.151
	SRR8316908	Gold flowering stage	7.578
SRP132670	SRR6706286	Control	20.581
	SRR6706287	Light intensity 50%	21.746
	SRR6706288	Light intensity 20%	22.066
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.019
	CNS0095593	Slightly white alabastrum(diploid) 2	27.807
	CNS0095594	Slightly white alabastrum(diploid) 3	22.922
	CNS0095595	Whole white alabastrum(diploid) 2	21.373
	CNS0095596	Whole white alabastrum(diploid) 3	15.852
	CNS0095597	Whole white alabastrum(diploid) 4	16.790
	CNS0095598	Silvery flower (diploied) 1	19.982
	CNS0095599	Silvery flower (diploied) 2	21.321
	CNS0095600	Silvery flower (diploied) 3	13.625
	CNS0095601	Golden flower (diploid) 1	15.773
	CNS0095602	Golden flower (diploid) 2	16.454
	CNS0095603	Golden flower (diploid) 3	14.200
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.475
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.993
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.470
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.365
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.487
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.522
	CNS0095610	Silvery flower (tetraploid) 1	3.232
	CNS0095611	Silvery flower (tetraploid) 2	2.765
	CNS0095612	Silvery flower (tetraploid) 3	1.352
	CNS0095613	Golden flower (tetraploid) 1	1.079
	CNS0095614	Golden flower (tetraploid) 2	2.607
	CNS0095615	Golden flower (tetraploid) 3	0.912
CRA001975	CRR073297	Stem 1	37.856
	CRR073298	Stem 2	34.851
	CRR073299	Stem 3	41.468
	CRR073300	Leaf 1	40.353
	CRR073301	Leaf 2	34.620
	CRR073302	Leaf 3	31.532
	CRR073303	Juvenile bud 1	46.567
	CRR073304	Juvenile bud 2	21.479
	CRR073305	Juvenile bud 3	50.523
	CRR073306	Third green 1	15.896
	CRR073307	Third green 2	16.591
	CRR073308	Third green 3	17.218
	CRR073309	Second white 1	8.322
	CRR073310	Second white 2	6.812
	CRR073311	Second white 3	5.503
	CRR073312	Silver flowering 1	6.434
	CRR073313	Silver flowering 2	5.199
	CRR073314	Silver flowering 3	7.388
	CRR073315	Gold flowering 1	28.358
	CRR073316	Gold flowering 2	40.819
	CRR073317	Gold flowering 3	31.257
	CRR073318	Tawny withering 1	42.834
	CRR073319	Tawny withering 2	46.520
	CRR073320	Tawny withering 3	42.412