Gene detail

Detail information of GWHGAAZE027478

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002518850.1	0	hypothetical protein RCOM_1311830 [Ricinus communis]
Swissprot	tr\|Q9XED8\|ARFI_ARATH	0	Auxin response factor 9
trEMBL	tr\|D7TVI5\|D7TVI5_VITVI	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT4G23980.1	1E-180	auxin response factor 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20488618	20493355	-
GWHAAZE00000008	mRNA	20488618	20493355	-
GWHAAZE00000008	exon	20488618	20488759	-
GWHAAZE00000008	exon	20488999	20489120	-
GWHAAZE00000008	exon	20489637	20490127	-
GWHAAZE00000008	exon	20490410	20490563	-
GWHAAZE00000008	exon	20490899	20490971	-
GWHAAZE00000008	exon	20491059	20491172	-
GWHAAZE00000008	exon	20491279	20491443	-
GWHAAZE00000008	exon	20491594	20491684	-
GWHAAZE00000008	exon	20491812	20491896	-
GWHAAZE00000008	exon	20491997	20492149	-
GWHAAZE00000008	exon	20492288	20492344	-
GWHAAZE00000008	exon	20492624	20492719	-
GWHAAZE00000008	exon	20492890	20493005	-
GWHAAZE00000008	exon	20493334	20493355	-
GWHAAZE00000008	CDS	20493334	20493355	-
GWHAAZE00000008	CDS	20492890	20493005	-
GWHAAZE00000008	CDS	20492624	20492719	-
GWHAAZE00000008	CDS	20492288	20492344	-
GWHAAZE00000008	CDS	20491997	20492149	-
GWHAAZE00000008	CDS	20491812	20491896	-
GWHAAZE00000008	CDS	20491594	20491684	-
GWHAAZE00000008	CDS	20491279	20491443	-
GWHAAZE00000008	CDS	20491059	20491172	-
GWHAAZE00000008	CDS	20490899	20490971	-
GWHAAZE00000008	CDS	20490410	20490563	-
GWHAAZE00000008	CDS	20489637	20490127	-
GWHAAZE00000008	CDS	20488999	20489120	-
GWHAAZE00000008	CDS	20488618	20488759	-

Transcript Sequence
>GWHTAAZE027512 ATGGCGATTCGAGCTTCTACAGATCGTGGAGAGGATAATCTGTATAAAGAGCTATGGAAGGCTTGTGCAGGTCCACTGGTGGATATTCCACAAAGTGGAGAAAAAGTGTTATACTTCCCTCAAGGTCATATGGAGCAATTAGAGGCATCAACAAATCAGGAACTAAATCAGCAAATTCCACACTTCAATCTTCAACCAAAGATCCTTTGTCGTGTAGTTCACATTCAACTCCTGGCTGAACAGGATTCTGATGAGGTTTATGCTCAAGTCACTTTGCTACCAGAATCAGATCAAACTGAGCCAAGAAGTCTTGATTCATGCCCAACCGAATCTCCAAGTCCTACTGTTCACTCGTTCTGCAAGGTTTTGACTGCCTCTGATACAAGCACTCATGGAGGTTTCTCTGTTCTTCGGAAACATGCTAATGAATGCCTCCCTCCACTGGACATGAACCAGCCAACTCCAACCCAAGAATTGGTAGCAAAGGACCTTCTTGGAATTGAATGGCGATTTAAGCATATATTTAGAGGCCAACCACGGAGGCATCTGCTTACAACAGGTTGGAGTACATTTGTTACCTCCAAGAGACTAGTTGCGGGGGATTCTTTTGTATTCCTTAGGGGAGAGAACGGGGAACTACGTGTAGGGGTAAGGCGTCATGCTCGTCAACAGAGCTCGGTCCCTTCATCAGTGATTTCGAGCCAGAGTATGCACCTTGGAGTGCTTGCAACTGCATCTCATGCTGTTGCAACCCAAACACTCTTTGTTGTTCACTACAAACCGAGAACATGTCAGTTCATCATCGGCTTGAACAAATATCTAGAAGCTGTGAATAATGGGTATGCTGTTGGCATGAGATTTAAGATGCAGTTTGAGGGTGAAGACTCTCCTGAGAGAAGGTTTAATGGCACAATAGTTGGGGTTGAAGATGTTTCACCCCATTGGGAAGCTTCTAGATGGCGATCACTGAAGGTTCAATGGGATGAACCTGCATCTATTGCAAGACCTGATAGGGTTTCACCTTGGGAGATAGAACCCTTTGTGGCTTCAGTTCCTACTAGCCTGGCTCAACCAGTGGTGTTGAAGAATAAAAGACCACGACAACCTGTTGAAATCCCAGCTCCTGAAACCATTTCTTCAACTGCATCAGCCATGTGGAATCCTTGCCAAGATTCAACCCAATTTAGTGGCACTCCTAAAGGAAACAAGAGTGAATATCATGTTTCTTGGCATAAGCAAACAGAAATGAACTCCACTCTCATGAATAGCAGCAATAACTCCTCTATTTTAAGGAGTCTTTCAGTGGGAAATTGGGTCCCTCCTTCAAATGTGAATGCTGTTATGAAGAAATCGGAGACTGTTACAAGCTGCCGATTGTTTGGTTTTGATTTGAAAGCTCCTTCAGCAGGTGCCGTCGTTGATGATAAGGCAAATGTAAATCCAGTCCATGAGAATGCTGAAGGGCATTTTCCAAGTTCTCATTCGGCTGGTGATTCAGACCAGAAATCAGACCTTTCAAAGGATAATATTATGAAAGAACGGCAGCAAGGGCAGCTACACATATCACCGAAGGAAGTTCAAAGCAAACAAAGTTGCTCTACAAGAACTCGTACAAAGGGGATTGCTGTGGGCCGGGCAGTGGACTTAACAGCGTTAAGAGGGTATGATGAGCTTATAAGTGAACTAGAAGCTTTGTTTGAAATCAGGGGTGAGATTCGACCTCGAATCAATGGGAAATTGGAATTCTGTGACATGGTGAGGAGGATCTTTATTTGTTTGAGCCAAGATGTTAAGAAAATGAGTGGAGGAAGCAAGCTTCTTCCTATAGTATCTGTGGACAATGATGGATCTGCTTATAGCTTGGACACAGCTCAAAATTAA

Network for GWHGAAZE027478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	119	220	1.50E-21
PF06507.14	Auxin_resp	245	324	4.90E-29

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
K14486	K14486, ARF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.340
	SRR3591706	second leaf	27.667
	SRR3591707	mature leaf	46.292
	SRR3591708	Shoot apex	63.787
	SRR3591709	Stem	83.551
	SRR3591710	White floral bud	29.286
	SRR3591711	White flower	54.612
	SRR3591712	Green floral bud	14.175
	SRR3591713	Yellow flower	51.828
SRP173429	SRR8316895	Juvenile bud stage	12.654
	SRR8316896	Juvenile bud stage	15.937
	SRR8316897	Juvenile bud stage	5.852
	SRR8316894	Third green stage	6.953
	SRR8316900	Third green stage	10.361
	SRR8316901	Third green stage	10.311
	SRR8316898	Complete white stage	4.295
	SRR8316899	Complete white stage	12.725
	SRR8316903	Complete white stage	10.030
	SRR8316902	Silver flowering stage	11.336
	SRR8316904	Silver flowering stage	17.906
	SRR8316905	Silver flowering stage	10.379
	SRR8316906	Gold flowering stage	52.612
	SRR8316907	Gold flowering stage	39.147
	SRR8316908	Gold flowering stage	66.772
SRP132670	SRR6706286	Control	13.072
	SRR6706287	Light intensity 50%	14.157
	SRR6706288	Light intensity 20%	13.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.011
	CNS0095593	Slightly white alabastrum(diploid) 2	5.724
	CNS0095594	Slightly white alabastrum(diploid) 3	5.473
	CNS0095595	Whole white alabastrum(diploid) 2	3.674
	CNS0095596	Whole white alabastrum(diploid) 3	3.941
	CNS0095597	Whole white alabastrum(diploid) 4	3.507
	CNS0095598	Silvery flower (diploied) 1	25.836
	CNS0095599	Silvery flower (diploied) 2	13.297
	CNS0095600	Silvery flower (diploied) 3	36.190
	CNS0095601	Golden flower (diploid) 1	26.709
	CNS0095602	Golden flower (diploid) 2	51.644
	CNS0095603	Golden flower (diploid) 3	47.451
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.687
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.365
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.391
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.893
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.616
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.657
	CNS0095610	Silvery flower (tetraploid) 1	64.894
	CNS0095611	Silvery flower (tetraploid) 2	78.400
	CNS0095612	Silvery flower (tetraploid) 3	65.531
	CNS0095613	Golden flower (tetraploid) 1	56.410
	CNS0095614	Golden flower (tetraploid) 2	81.678
	CNS0095615	Golden flower (tetraploid) 3	130.025
CRA001975	CRR073297	Stem 1	35.880
	CRR073298	Stem 2	30.913
	CRR073299	Stem 3	33.450
	CRR073300	Leaf 1	17.476
	CRR073301	Leaf 2	14.004
	CRR073302	Leaf 3	12.818
	CRR073303	Juvenile bud 1	12.525
	CRR073304	Juvenile bud 2	6.157
	CRR073305	Juvenile bud 3	15.041
	CRR073306	Third green 1	4.980
	CRR073307	Third green 2	5.259
	CRR073308	Third green 3	5.311
	CRR073309	Second white 1	16.852
	CRR073310	Second white 2	13.667
	CRR073311	Second white 3	21.255
	CRR073312	Silver flowering 1	25.487
	CRR073313	Silver flowering 2	28.748
	CRR073314	Silver flowering 3	20.490
	CRR073315	Gold flowering 1	14.739
	CRR073316	Gold flowering 2	17.171
	CRR073317	Gold flowering 3	19.001
	CRR073318	Tawny withering 1	19.296
	CRR073319	Tawny withering 2	11.582
	CRR073320	Tawny withering 3	22.672