Gene detail

Detail information of GWHGAAZE027479

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011026849.1	0	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Populus euphratica]
COG	YP_008237.1	6E-166	3-oxoacyl-ACP synthase
Swissprot	tr\|P52410\|KASC1_ARATH	0	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor)
trEMBL	tr\|A0A061G5E6\|A0A061G5E6_THECC	0	3-ketoacyl-acyl carrier protein synthase I {ECO:0000313\|EMBL:EOY25075.1}
TAIR10	AT5G46290.1	0	3-ketoacyl-acyl carrier protein synthase I

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20512055	20515979	-
GWHAAZE00000008	mRNA	20512055	20515979	-
GWHAAZE00000008	exon	20515817	20515979	-
GWHAAZE00000008	exon	20514789	20515144	-
GWHAAZE00000008	exon	20513497	20513928	-
GWHAAZE00000008	exon	20512719	20512892	-
GWHAAZE00000008	exon	20512475	20512588	-
GWHAAZE00000008	exon	20512235	20512312	-
GWHAAZE00000008	exon	20512055	20512120	-
GWHAAZE00000008	CDS	20515817	20515979	-
GWHAAZE00000008	CDS	20514789	20515144	-
GWHAAZE00000008	CDS	20513497	20513928	-
GWHAAZE00000008	CDS	20512719	20512892	-
GWHAAZE00000008	CDS	20512475	20512588	-
GWHAAZE00000008	CDS	20512235	20512312	-
GWHAAZE00000008	CDS	20512055	20512120	-

Transcript Sequence
>GWHTAAZE027513 ATGGCGAGCATTGCTACTACTTGTTCTTCTGGTTTGATCTTTAGGGCTAAAGAATCAAGCAGCAATGGAGCTTCTATGCCTCAATTTAATGGGCTTAGAGCAGTTGATAGTAAACAAGTTGTTTCATTTGGTTCTAAATCAGATGGGTCCATTTCCACTTCAGCTCCGAAATGCAGAAGAATCAAGGCCGTGGCTTCGACCGTTTCAGCTCCCAAGCGGGAAACAGATCCGAAGAAAAGGGTTGTGATAACGGGAATGGGACTTGTTTCGGTTTTTGGCAATGACATTGATACATTCTATAATTCACTTCTTGAGGGACAGAGTGGGATTACCCTTATAGACAGGTTTGATGCTACTACTTTCTCGGTTAGATTTGCGGGTCAGATCCGTGATTTCTCCTCAAAAGGGTTCATTGATGGGAAGAACGATCGACGTCTAGATGACTGTTGGAGGTACTGTTTGGTTGCTGGCAAAAGGGCTCTTGAGGATGCCACTCTTGGGCCAGATGTCCTACAAACTATGGACAGAACAAGAATTGGAGTCCTTGTAGGGTCCGGCATGGGAGGATTAACAGCTTTCAGTAATGGAGTAGAAGCTCTCATCCAAAAGGGATATAAGAAGATGTCTCCATTTTTCATTCCTTACTCAATTACCAACATGGGGTCCGCATTGTTGGCCATTGATACGGGCTTAATGGGACCCAATTACTCCATTTCAACCGCTTGTGCTACTGCAAATTACTGCTTTTATGCTGCTGCAAACCACATTAGAAGGGGTGAAGCCAACATTATGGTAGCTGGTGGGACCGAGGCTGCAGTCAATGCTACCGGGGTTGGTGGCTTTATCGCTTGTCGGGCCTTGTCTCAAAGGAATGATGAACCCCATAAGGCTTCAAGGCCGTGGGACCAAGCCCGTGATGGTTTTGTTATCGGAGAAGGCTCTGGTGTACTGATTATGGAAAGCTTGGAGCATGCCACAAAAAGAGGAGCTAATATCATAGCTGAGTACCTAGGAGGTGCTATTACATGTGATGCTCATCACATGACTGACCCTCGATCGGACGGCCTTGGAGTATCGTCTTGCATCACCAAGAGTTTAGATGATGCTGGAGTTTCACCCGAAGAGGTGAATTACATAAATGCCCATGCCACATCAACCCTTGCAGGGGATTTGGCCGAGTTTAATGCCATCAAGAAGGTCTTTAAGGACACATCCGAGATAAAGATGAATGGCACTAAGTCAATGATCGGACATGGGCTTGGGGCTGCTGGAGGATTGGAAGCCATTGCATCCATTAAAGCAATCACTACTGGTTGGAACTTGGAGCCTGTCGTTACCATTGACACTGTCCCAAATGTGAAGAAACAGCATGAAGTCAATGTC

Network for GWHGAAZE027479

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00109.27	ketoacyl-synt	79	325	4.10E-55
PF02801.23	Ketoacyl-synt_C	334	438	6.70E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09458	fabF, OXSM, CEM1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.427
	SRR3591706	second leaf	31.307
	SRR3591707	mature leaf	13.451
	SRR3591708	Shoot apex	39.814
	SRR3591709	Stem	26.337
	SRR3591710	White floral bud	35.199
	SRR3591711	White flower	38.353
	SRR3591712	Green floral bud	45.353
	SRR3591713	Yellow flower	51.559
SRP173429	SRR8316895	Juvenile bud stage	28.619
	SRR8316896	Juvenile bud stage	34.780
	SRR8316897	Juvenile bud stage	14.107
	SRR8316894	Third green stage	17.286
	SRR8316900	Third green stage	63.728
	SRR8316901	Third green stage	45.163
	SRR8316898	Complete white stage	20.201
	SRR8316899	Complete white stage	50.936
	SRR8316903	Complete white stage	23.357
	SRR8316902	Silver flowering stage	12.718
	SRR8316904	Silver flowering stage	13.353
	SRR8316905	Silver flowering stage	7.770
	SRR8316906	Gold flowering stage	31.770
	SRR8316907	Gold flowering stage	32.211
	SRR8316908	Gold flowering stage	38.613
SRP132670	SRR6706286	Control	63.107
	SRR6706287	Light intensity 50%	70.174
	SRR6706288	Light intensity 20%	79.670
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.681
	CNS0095593	Slightly white alabastrum(diploid) 2	25.056
	CNS0095594	Slightly white alabastrum(diploid) 3	22.943
	CNS0095595	Whole white alabastrum(diploid) 2	22.434
	CNS0095596	Whole white alabastrum(diploid) 3	20.175
	CNS0095597	Whole white alabastrum(diploid) 4	13.310
	CNS0095598	Silvery flower (diploied) 1	14.832
	CNS0095599	Silvery flower (diploied) 2	14.324
	CNS0095600	Silvery flower (diploied) 3	32.417
	CNS0095601	Golden flower (diploid) 1	11.574
	CNS0095602	Golden flower (diploid) 2	28.138
	CNS0095603	Golden flower (diploid) 3	30.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.011
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.676
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.835
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.605
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.442
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.490
	CNS0095610	Silvery flower (tetraploid) 1	37.684
	CNS0095611	Silvery flower (tetraploid) 2	35.022
	CNS0095612	Silvery flower (tetraploid) 3	34.189
	CNS0095613	Golden flower (tetraploid) 1	14.777
	CNS0095614	Golden flower (tetraploid) 2	28.900
	CNS0095615	Golden flower (tetraploid) 3	20.298
CRA001975	CRR073297	Stem 1	41.671
	CRR073298	Stem 2	39.290
	CRR073299	Stem 3	48.900
	CRR073300	Leaf 1	47.712
	CRR073301	Leaf 2	43.592
	CRR073302	Leaf 3	52.108
	CRR073303	Juvenile bud 1	48.251
	CRR073304	Juvenile bud 2	53.572
	CRR073305	Juvenile bud 3	40.646
	CRR073306	Third green 1	18.949
	CRR073307	Third green 2	8.474
	CRR073308	Third green 3	13.058
	CRR073309	Second white 1	24.752
	CRR073310	Second white 2	16.696
	CRR073311	Second white 3	17.096
	CRR073312	Silver flowering 1	19.627
	CRR073313	Silver flowering 2	20.941
	CRR073314	Silver flowering 3	23.582
	CRR073315	Gold flowering 1	14.725
	CRR073316	Gold flowering 2	22.282
	CRR073317	Gold flowering 3	20.580
	CRR073318	Tawny withering 1	36.194
	CRR073319	Tawny withering 2	25.423
	CRR073320	Tawny withering 3	27.541