Gene detail

Detail information of GWHGAAZE027485

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004245484.1	1.2398E-105	PREDICTED: protein NLP7 isoform X1 [Solanum lycopersicum]
Swissprot	tr\|Q84TH9\|NLP7_ARATH	7E-84	Protein NLP7
trEMBL	tr\|M1AWJ6\|M1AWJ6_SOLTU	9E-106	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400031941}
TAIR10	AT4G24020.1	6E-75	NIN like protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20680513	20690699	+
GWHAAZE00000008	mRNA	20680513	20690699	+
GWHAAZE00000008	exon	20680513	20680693	+
GWHAAZE00000008	exon	20680924	20681405	+
GWHAAZE00000008	exon	20682497	20682535	+
GWHAAZE00000008	exon	20682629	20683502	+
GWHAAZE00000008	exon	20684069	20684552	+
GWHAAZE00000008	exon	20685360	20685393	+
GWHAAZE00000008	exon	20685474	20685628	+
GWHAAZE00000008	exon	20686145	20686246	+
GWHAAZE00000008	exon	20686765	20686843	+
GWHAAZE00000008	exon	20686925	20687071	+
GWHAAZE00000008	exon	20688990	20689107	+
GWHAAZE00000008	exon	20689374	20689555	+
GWHAAZE00000008	exon	20689676	20689730	+
GWHAAZE00000008	exon	20689901	20690359	+
GWHAAZE00000008	exon	20690572	20690699	+
GWHAAZE00000008	CDS	20680513	20680693	+
GWHAAZE00000008	CDS	20680924	20681405	+
GWHAAZE00000008	CDS	20682497	20682535	+
GWHAAZE00000008	CDS	20682629	20683502	+
GWHAAZE00000008	CDS	20684069	20684552	+
GWHAAZE00000008	CDS	20685360	20685393	+
GWHAAZE00000008	CDS	20685474	20685628	+
GWHAAZE00000008	CDS	20686145	20686246	+
GWHAAZE00000008	CDS	20686765	20686843	+
GWHAAZE00000008	CDS	20686925	20687071	+
GWHAAZE00000008	CDS	20688990	20689107	+
GWHAAZE00000008	CDS	20689374	20689555	+
GWHAAZE00000008	CDS	20689676	20689730	+
GWHAAZE00000008	CDS	20689901	20690359	+
GWHAAZE00000008	CDS	20690572	20690699	+

Transcript Sequence
>GWHTAAZE027519 ATGGCGAAAGAGAAAGAGAAGGAGCATAAATTTAATGGCGAAGGACACTATTCAGTTACACACTTCATTAAAGACATGCCCTGTATACTCGACTGGGATTACCCCAAATATTCCCACCCACTCTGGGTTTTCTGGACCAGACCCCATCATCAACACCAATCCCCTCGTATTCCTCCCTCCTGTATCACAGAGAAGATAAAGGATGCGCTTCTCCACCACAGCCATGCTGCATTGGGAGGAGAATCGAATACTCTAGTTCAGTTCTGGGCACCGGCAACAATTGGTGGCCGGCTCGTCCTCAGAACGTCCAATCAGCCTTTTAGTATTAACAGAATCGACAGAGGACTCTGTGAGTATAGAAAGCACTGTCTTGTATACGAAATCCACGTAGAGAATGAAGAAGAAAAAGAAGAGGAGGGTGTAATTAGGCGTGTGTTCCGGCGTGAGTATCCGGAAATCAATCCAGATGTGGAATACTACAGTACTGATGAGTATCCGCAGCGTGATTTTGCTTTAAAATGCGGTGTAAGGAGATGTTTGGCTTTGCCGGTGTTTGAAGCATCTGGCCAGGGCTGTGTTGGTGTGCTTGAGGTTGTTGATACTGCAACTCAACATTCTTCTTTCACTAGTAATCTGTTTGGGATAGCATACAGTATTCTTCAGGCTGGCAGCTTTAAATCATTTTCCCGGTTTGACCTACAAATGGGGGAGGATCTGACAGATACAGTGGTTGTAATCAATGAGATTTTGGAAGAGGTGTGTACTACACACCAATTACCTGTTGCACAGATCTGGGTCCCATGCAGCAGCCATAGAGGTGGTTATTTGGAGAAGAGATCGAAGAGCTTTGATTTAATCCACAGTGATATACTTTCCACAACATGTCATGTGGTTAATCATGATATGATGTTTGATTTCAGTAGATCATGCGTTTATCATCCCATGAAAAAGGGTCAAGGACTTGTTGGCAAGGCACTTTTATCCCGCAAAGCGTGCTTCTGCAGAGATATAACCCGACTCCCCATAACCGAGTACCCTTTAGCCCATTATGCACGCAAGTGTGGGTTAACAAGCTGTTTTGCTATTTGCTTGCGGGATAATTACATTGAAAATCAGGATTATGTACTTGAGTTCTTTCTGCCCCCTTGCGATACAGCAAGTGAAGATCCTCAGAATTTCTTGGACTCGCTATTGGCAACAATGAAGAAACTTTTTGGAGGTCTTAAAATTTCATCAGGAGAAGAACTAGGAGATGAATTATATGTTGAAGTTATTAAATCTTCTTCAGACGATGAACCTGATTCCTTTAAAATATGTGAAACTACTAGACCCCCGCTAGTTCCTGAAGCCTTAGAAAATGAAAGAGAAGGGCAGCTAAATGTATCTGATGAGCAATTGTGTGTGAAAACTGTTTCTAGTGCAGAGCAAAACATTGTCGTCGTTACTTCTTCAGAGATTGAAAGTTGTGTAGAGATATCAGAGATGGAATATAGAACAACTAACATTTCATTAACTCGCGAGGATCTCAAACAACATTTCGGAAAGAAGCTTGAGGATGCTGCAAAGATCCTTGGGGTTAGTCGATCTACAATGAAGCGTGTGTGTAGAGAACGTGGAATCAAGAAGTGGCCATTTCCCAAGAGAAAGAAGTTTAATCAGTCTCTTCCTCCTCAAAAGCATGCGAATGAATTTGTTGAAGGTTGTAAGGAACGAAACCTAAAATGCGGTAGGAAAGAGCCCTCAAGTTCTGACATGCCTCCTGAACAACCCACAGAGGCTGTTCTTAGCAACAAAACCAGTGCTATGCCAATGCAAGTTGTGAGAACCATGATGGTAAAGGCAACATATGGAGATGATATTGTTAAGTTTCAGCTTCCTTTTTCATCAAAAATGACAGAATTAGTAGAGAAAGTGACTATGAGATTCCCAGTAGTGATGGATACACCTTTAAGTATCAAGTATGTAGATGATGACGGTGATTGGGTTTTGATTGCTTGTGATGAGGATCTGCAGGAATGTATGGATAGCTTGAGATTATTGGGCACTACTGCAATCAAAATAAAAACTGAAACTGCTGCTGAAAAAGCAATTGCTGGTGCAATTTTAGCCATTGGAATTGAGGTTCCTAGACACAACCTTAGGGGCTTCACTGGCGAGTTTATTTCGAAACGAAACTCGAAAGATGATATCCATAGGATTCAAAGGGTTTGTGGGCAGCATGGACTTGATGAAGGTAGAGAAGGAATGTGCAAGATTGAAAACCTGGAGCCTGATCTCCAAGCTAGTTTGTCTCGTAAACAGCAGAAAAGCAAAATCAGAAGAAGAAGATATTTGGATGATGGGGGAGGAGGGAAGCATTGTATGAGCCTTAAATTTAGTACTGTCTTCCAAGATGAAGAAGATGATGAGTTTGGTGGTGGTGGTGGTGGTCGAGATTTTGCACTCAAATGTGGGGTACGGAGATCTTTGGTTGTGCCAGTGTTCGATCCTTCTGGCCAGACTTGTGTTGGTGTACTTGAACTCGTTGACAGGGGCAAGTATGAAATCTTCCCTATTGGTCTAAAACGTATATCACAGACCTGGTTCCCATTTGGACGTACCGGTGCCATGGCTTATAGTGACGACTGTTATTTAAGCTGCAGCTCATCTTCGTCATTATATCAACATGGTAACGATTGTGATGGGGATAAGCATGATCCGAGGACCTTCTTGGAGTCTCTTTTGGCAACAGTGAATAAGCATTTGCGAGGTTTCAAAATTTCTCCAGGAGAAGGATTGGGATTGGGAGAGGAGTTATCTGTTGCAGTTGCTAACTATTTTTCCTCTATAAATGATGAACCGGATTCCTTTGACGACTCCAGCATGGAAAATGTTGTTGCTCTCGTGAAACATGTTGGAAAGAAGCTTGATGATGCTGCAGATATTCTTGGGGCTAGTAGATCTACAATGAAGCATGCATGTAGAGTACACGGTATCAAGAAGTGGCCCTTTCCAAAGAAGAAGTTTAAACCCCCGCCCTCTAGTTTGAAGCATGTGAATGGATTTGTTCAAGGTGGTGATGAACGAGTCCCCAAATTTGGTAATAGTAAGCCCTCATGTTCTGATCCACCTCTTATGCACGCCATGAGTGTTGTTGCTCATACAATATCAAACATTACACCAAAACAAGATGTGGACAGCGTGACTGTGAAGGCAACATATGGAGTTGAAATGATTAGATTTCGGCTCTCTTTCTCATCAAGAAAGGCGGATTTAGTGGAGAAGATGACTCAGAGGTTTCCGTTGAATGATGGAAGTTTTAATATCAAGTATGAGGATGACGATGGTGATTGGATTTTAATCGTCTGTGATGAGGATCCAGAGGAATGTATTGCTATTTCCAAGAGCAAGAATAAATATGGGTCACAGCTTACTGAGTTCAAATTGCTAACGGAGATATGCTTACAGTTAGCATCCAAAGCCGTAGCTAGTAAGCGCCTAGCTGAAAGCTGCGCCAAACAGCCTTGGGAGCTGCAATAG

Network for GWHGAAZE027485

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	503	550	2.10E-16
PF00564.25	PB1	610	683	3.10E-16
PF02042.16	RWP-RK	960	998	1.50E-08
PF00564.25	PB1	1061	1129	2.70E-14

Protein Sequence

>GWHPAAZE027503
MAKEKEKEHKFNGEGHYSVTHFIKDMPCILDWDYPKYSHPLWVFWTRPHHQHQSPRIPPSCITEKIKDALLHHSHAALGGESNTLVQFWAPATIGGRLVLRTSNQPFSINRIDRGLCEYRKHCLVYEIHVENEEEKEEEGVIRRVFRREYPEINPDVEYYSTDEYPQRDFALKCGVRRCLALPVFEASGQGCVGVLEVVDTATQHSSFTSNLFGIAYSILQAGSFKSFSRFDLQMGEDLTDTVVVINEILEEVCTTHQLPVAQIWVPCSSHRGGYLEKRSKSFDLIHSDILSTTCHVVNHDMMFDFSRSCVYHPMKKGQGLVGKALLSRKACFCRDITRLPITEYPLAHYARKCGLTSCFAICLRDNYIENQDYVLEFFLPPCDTASEDPQNFLDSLLATMKKLFGGLKISSGEELGDELYVEVIKSSSDDEPDSFKICETTRPPLVPEALENEREGQLNVSDEQLCVKTVSSAEQNIVVVTSSEIESCVEISEMEYRTTNISLTREDLKQHFGKKLEDAAKILGVSRSTMKRVCRERGIKKWPFPKRKKFNQSLPPQKHANEFVEGCKERNLKCGRKEPSSSDMPPEQPTEAVLSNKTSAMPMQVVRTMMVKATYGDDIVKFQLPFSSKMTELVEKVTMRFPVVMDTPLSIKYVDDDGDWVLIACDEDLQECMDSLRLLGTTAIKIKTETAAEKAIAGAILAIGIEVPRHNLRGFTGEFISKRNSKDDIHRIQRVCGQHGLDEGREGMCKIENLEPDLQASLSRKQQKSKIRRRRYLDDGGGGKHCMSLKFSTVFQDEEDDEFGGGGGGRDFALKCGVRRSLVVPVFDPSGQTCVGVLELVDRGKYEIFPIGLKRISQTWFPFGRTGAMAYSDDCYLSCSSSSSLYQHGNDCDGDKHDPRTFLESLLATVNKHLRGFKISPGEGLGLGEELSVAVANYFSSINDEPDSFDDSSMENVVALVKHVGKKLDDAADILGASRSTMKHACRVHGIKKWPFPKKKFKPPPSSLKHVNGFVQGGDERVPKFGNSKPSCSDPPLMHAMSVVAHTISNITPKQDVDSVTVKATYGVEMIRFRLSFSSRKADLVEKMTQRFPLNDGSFNIKYEDDDGDWILIVCDEDPEECIAISKSKNKYGSQLTEFKLLTEICLQLASKAVASKRLAESCAKQPWELQ

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.029
	SRR3591706	second leaf	3.552
	SRR3591707	mature leaf	4.248
	SRR3591708	Shoot apex	4.714
	SRR3591709	Stem	8.422
	SRR3591710	White floral bud	4.134
	SRR3591711	White flower	2.743
	SRR3591712	Green floral bud	5.504
	SRR3591713	Yellow flower	1.358
SRP173429	SRR8316895	Juvenile bud stage	2.262
	SRR8316896	Juvenile bud stage	3.240
	SRR8316897	Juvenile bud stage	2.034
	SRR8316894	Third green stage	2.029
	SRR8316900	Third green stage	3.890
	SRR8316901	Third green stage	4.425
	SRR8316898	Complete white stage	0.909
	SRR8316899	Complete white stage	5.665
	SRR8316903	Complete white stage	1.716
	SRR8316902	Silver flowering stage	1.168
	SRR8316904	Silver flowering stage	1.571
	SRR8316905	Silver flowering stage	0.401
	SRR8316906	Gold flowering stage	2.181
	SRR8316907	Gold flowering stage	1.301
	SRR8316908	Gold flowering stage	0.908
SRP132670	SRR6706286	Control	2.801
	SRR6706287	Light intensity 50%	3.272
	SRR6706288	Light intensity 20%	2.708
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.483
	CNS0095593	Slightly white alabastrum(diploid) 2	2.436
	CNS0095594	Slightly white alabastrum(diploid) 3	2.146
	CNS0095595	Whole white alabastrum(diploid) 2	3.416
	CNS0095596	Whole white alabastrum(diploid) 3	2.665
	CNS0095597	Whole white alabastrum(diploid) 4	3.786
	CNS0095598	Silvery flower (diploied) 1	2.561
	CNS0095599	Silvery flower (diploied) 2	2.271
	CNS0095600	Silvery flower (diploied) 3	3.033
	CNS0095601	Golden flower (diploid) 1	2.005
	CNS0095602	Golden flower (diploid) 2	3.182
	CNS0095603	Golden flower (diploid) 3	3.472
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.478
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.811
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.768
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.515
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.551
	CNS0095610	Silvery flower (tetraploid) 1	1.624
	CNS0095611	Silvery flower (tetraploid) 2	2.820
	CNS0095612	Silvery flower (tetraploid) 3	1.553
	CNS0095613	Golden flower (tetraploid) 1	0.427
	CNS0095614	Golden flower (tetraploid) 2	0.852
	CNS0095615	Golden flower (tetraploid) 3	0.768
CRA001975	CRR073297	Stem 1	4.450
	CRR073298	Stem 2	3.499
	CRR073299	Stem 3	3.454
	CRR073300	Leaf 1	4.024
	CRR073301	Leaf 2	3.036
	CRR073302	Leaf 3	2.155
	CRR073303	Juvenile bud 1	2.812
	CRR073304	Juvenile bud 2	2.091
	CRR073305	Juvenile bud 3	2.258
	CRR073306	Third green 1	0.526
	CRR073307	Third green 2	0.441
	CRR073308	Third green 3	0.371
	CRR073309	Second white 1	0.780
	CRR073310	Second white 2	0.473
	CRR073311	Second white 3	0.457
	CRR073312	Silver flowering 1	0.632
	CRR073313	Silver flowering 2	0.970
	CRR073314	Silver flowering 3	0.150
	CRR073315	Gold flowering 1	3.022
	CRR073316	Gold flowering 2	3.151
	CRR073317	Gold flowering 3	3.134
	CRR073318	Tawny withering 1	4.232
	CRR073319	Tawny withering 2	4.616
	CRR073320	Tawny withering 3	3.820