Gene detail

Detail information of GWHGAAZE027488

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KFK31880.1	0	udp-d-glucose udp-d-galactose 4-epimerase 5 [Arabis alpina]
COG	NP_391765.1	6E-140	UDP-glucose 4-epimerase
Swissprot	tr\|O65781\|GALE2_CYATE	0	UDP-glucose 4-epimerase GEPI48
trEMBL	tr\|A0A087GPS8\|A0A087GPS8_ARAAL	0	Udp-d-glucose udp-d-galactose 4-epimerase 5 {ECO:0000313\|EMBL:KFK31880.1}
TAIR10	AT4G10960.1	8E-160	UDP-D-glucose/UDP-D-galactose 4-epimerase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20710782	20728622	-
GWHAAZE00000008	mRNA	20710782	20728622	-
GWHAAZE00000008	exon	20728440	20728622	-
GWHAAZE00000008	exon	20726713	20726762	-
GWHAAZE00000008	exon	20726029	20726164	-
GWHAAZE00000008	exon	20721351	20721452	-
GWHAAZE00000008	exon	20720961	20721188	-
GWHAAZE00000008	exon	20720433	20720511	-
GWHAAZE00000008	exon	20718870	20718952	-
GWHAAZE00000008	exon	20718626	20718717	-
GWHAAZE00000008	exon	20717693	20717800	-
GWHAAZE00000008	exon	20710782	20711751	-
GWHAAZE00000008	CDS	20728440	20728622	-
GWHAAZE00000008	CDS	20726713	20726762	-
GWHAAZE00000008	CDS	20726029	20726164	-
GWHAAZE00000008	CDS	20721351	20721452	-
GWHAAZE00000008	CDS	20720961	20721188	-
GWHAAZE00000008	CDS	20720433	20720511	-
GWHAAZE00000008	CDS	20718870	20718952	-
GWHAAZE00000008	CDS	20718626	20718717	-
GWHAAZE00000008	CDS	20717693	20717800	-
GWHAAZE00000008	CDS	20710782	20711751	-

Transcript Sequence
>GWHTAAZE027522 ATGTCGCAGATCGTATTAGTAACTGGTGGTGCAGGATATATTGGAAGCCATACGGTGCTACAGTTGTTGTTGGGAGGGTATAAAGCCGTTGTGCTCGATAATCTCTACAATTCCTGTGAAATTGCTCTCAAGCGAGTTCGAGAACTCGCCGGTAAACATGCGACAAATTTGTCCTTTCATAAGATAGACATACGGGATAAGACAGGACTTGAACGTGTATTTTCTTCGACTAAGTTTTATGCTGTTATCCATTTTGCTGGATTAAAAGCAGTTGGTGAAAGTGTGAAGCAACCCTTAACATATTACAGTAACAACATTAATGGTACTGTTACTCTGCTGGAAGTCATGGCCAACCATGGATGCAAGAAGCTTGTGTTTTCATCATCAGCTACCGTTTATGGTTGGCCAAAAGAGGTACCCTGCACAGAAGATTTTCCCCTAGCTGCAGTTAGTCCATATGGGCGAACAAAGCTTTTCGTTGAAGATTTATTCCGGGATTTGAGCCAGGCGGATTCTGAGTGGAAAATCATACTGCTGCGGTACTTCAACCCAGTTGGTGCACATCCTAGTGGTCATATTGGCGAGGACCCTCGTGGTACACCTAACAATCTCATGCCCTTCGTACAGCAAGTTGCTGTTGGCAGGCGGCCTGCCCTTACAGTTTTTGGAACTGACTACTCAACAGTAGATGGTACAGGGGTGCGTGATTATATCCATGTTGTGGATTTAGCCCATGGCCACCTTGCTGCATTGAGCAAGCTATCTGATCCTTGTATAGGTTGTGAAGTATACAACTTGGGAACTGGGAAAGGAACATCAGTTCTGGAAATGGTAGCAGCATTTGAGAAAGCATCTGGAAAGAAAATTCCTCTGGTGATGGCTGGGCGGCGTCCTGGTGATGCTGACATGGTTTATGCATCAAAGGAGAAAGCAGAGCGTGAGTTAAAGTGGAAGGCGAAATATGGAATAGATGACATATGCAGAGATCAGTGGAACTGGGCTAGCAAGAATCCTTACGGCTATGTTATTCCAGAGCCTAAAATGCAACAGCTTCCACTCAAGAAAAATGTGGATCACCGACGGTCCGTTGCTGCCAGTCTGGTCCAGGGTGTCTACATTCTTGAGCGGGACCGCCAAGAGAAGCGAGAAGGATCTGAAGCACTTGCTCCTCCTTGGTGGAACTTCTTCAATTTCAAACTATGCAGTCAACTCATAGATGACGCTGATTCATGCATATTCGCCGCCATTTACCAACTGAACCCCCTATCACCTAAAAGCAAACACTCAACAGAAGAAAGCCCCCGTTTTGTTGTCGCCTTTCGAGGCACCTTAACCAAAGGAGATGCTTTTACCCGAGACGTCCAGTTGGACCTCCACTTCGTCCGCAACGGGCTACACCAAACATCCCGCTTCGAGATAGCCGTGAAAGCTGTTAGAAACATGGTTTCTGCTGTTGGAAATGCCTCAGTTTGGTTAGCTGGCCATTCACTAGGCTCAGCCATGGCAATGCTTGTGGGTAGAAATATGGCGAAAAAGGGGAAATTTCTTGAATCTTTTCTGTTCAACCCTCCATATGTTTCGGCTCCAATTGAGAGAATCCAAGATAAGACGCTCAAACACGGGATCCGAATAGCAAGCAGTGTTATTACTGCTGGGCTTGCCGTTTCCGTGAAGGCTAAAAACCAGCAGAACAAAAACGAAGACCCTTTTGCTGCTTTGTCGCCTTGGGTACCGTGTTTGTTTGTGAATCCCAAGGATAACCTTTGTGCGGAGTATATCGGGTATTTTCAACACAGGAGTGCAATGGAGAAGATTGGAGCTGGGAGTATCGAGAAGCTGGCAGCTCAGCATTCTATTTCGGGTCTGTTTATGACTGCAATTGGGAAGGAAACTGAAGAGCCATTGCACCTTATTCCTTCGGCAAATCTAACTATCAATTTAACACATTGTGAAAACTTCACTGAAGCTCACGGGCTTCATCAATGGTGGAGATCAGATCTGCAGTTGCACTCGGAGGTTTACAAGTACTGA

Network for GWHGAAZE027488

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	6	329	1.20E-64
PF01764.26	Lipase_3	437	515	8.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01784	galE, GALE	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0006012	biological_process	galactose metabolic process
GO:0003978	molecular_function	UDP-glucose 4-epimerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.039
	SRR3591706	second leaf	9.812
	SRR3591707	mature leaf	2.886
	SRR3591708	Shoot apex	11.739
	SRR3591709	Stem	7.893
	SRR3591710	White floral bud	36.401
	SRR3591711	White flower	12.652
	SRR3591712	Green floral bud	33.858
	SRR3591713	Yellow flower	17.482
SRP173429	SRR8316895	Juvenile bud stage	9.425
	SRR8316896	Juvenile bud stage	14.591
	SRR8316897	Juvenile bud stage	8.442
	SRR8316894	Third green stage	6.507
	SRR8316900	Third green stage	22.456
	SRR8316901	Third green stage	21.164
	SRR8316898	Complete white stage	6.067
	SRR8316899	Complete white stage	12.050
	SRR8316903	Complete white stage	7.968
	SRR8316902	Silver flowering stage	6.086
	SRR8316904	Silver flowering stage	8.912
	SRR8316905	Silver flowering stage	4.558
	SRR8316906	Gold flowering stage	14.323
	SRR8316907	Gold flowering stage	12.082
	SRR8316908	Gold flowering stage	11.842
SRP132670	SRR6706286	Control	20.695
	SRR6706287	Light intensity 50%	22.125
	SRR6706288	Light intensity 20%	22.039
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.144
	CNS0095593	Slightly white alabastrum(diploid) 2	17.640
	CNS0095594	Slightly white alabastrum(diploid) 3	18.687
	CNS0095595	Whole white alabastrum(diploid) 2	32.244
	CNS0095596	Whole white alabastrum(diploid) 3	33.643
	CNS0095597	Whole white alabastrum(diploid) 4	43.457
	CNS0095598	Silvery flower (diploied) 1	5.637
	CNS0095599	Silvery flower (diploied) 2	7.948
	CNS0095600	Silvery flower (diploied) 3	10.125
	CNS0095601	Golden flower (diploid) 1	6.473
	CNS0095602	Golden flower (diploid) 2	9.388
	CNS0095603	Golden flower (diploid) 3	9.811
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.411
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.843
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.955
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.993
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.620
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.063
	CNS0095610	Silvery flower (tetraploid) 1	12.275
	CNS0095611	Silvery flower (tetraploid) 2	16.208
	CNS0095612	Silvery flower (tetraploid) 3	27.196
	CNS0095613	Golden flower (tetraploid) 1	12.532
	CNS0095614	Golden flower (tetraploid) 2	12.819
	CNS0095615	Golden flower (tetraploid) 3	27.610
CRA001975	CRR073297	Stem 1	14.400
	CRR073298	Stem 2	11.982
	CRR073299	Stem 3	11.724
	CRR073300	Leaf 1	26.747
	CRR073301	Leaf 2	21.483
	CRR073302	Leaf 3	15.192
	CRR073303	Juvenile bud 1	24.123
	CRR073304	Juvenile bud 2	18.217
	CRR073305	Juvenile bud 3	10.587
	CRR073306	Third green 1	22.779
	CRR073307	Third green 2	20.558
	CRR073308	Third green 3	24.010
	CRR073309	Second white 1	17.195
	CRR073310	Second white 2	16.355
	CRR073311	Second white 3	16.441
	CRR073312	Silver flowering 1	30.492
	CRR073313	Silver flowering 2	25.072
	CRR073314	Silver flowering 3	19.456
	CRR073315	Gold flowering 1	8.595
	CRR073316	Gold flowering 2	8.000
	CRR073317	Gold flowering 3	5.208
	CRR073318	Tawny withering 1	15.583
	CRR073319	Tawny withering 2	17.989
	CRR073320	Tawny withering 3	12.970