Gene detail

Detail information of GWHGAAZE027491

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO76531.1	9.9316E-165	hypothetical protein CISIN_1g0137752mg [Citrus sinensis]
COG	YP_645929.1	5E-19	protein translocase subunit yidC
Swissprot	tr\|Q42191\|OXA1_ARATH	5E-119	Mitochondrial inner membrane protein OXA1 (Precursor)
trEMBL	tr\|A0A067GMH8\|A0A067GMH8_CITSI	4E-165	Uncharacterized protein {ECO:0000313\|EMBL:KDO76531.1}
TAIR10	AT5G62050.1	4E-88	homolog of yeast oxidase assembly 1 (OXA1)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20802199	20814226	+
GWHAAZE00000008	mRNA	20802199	20814226	+
GWHAAZE00000008	exon	20802199	20802406	+
GWHAAZE00000008	exon	20806257	20806734	+
GWHAAZE00000008	exon	20809902	20809992	+
GWHAAZE00000008	exon	20811094	20811141	+
GWHAAZE00000008	exon	20811586	20811644	+
GWHAAZE00000008	exon	20812610	20812685	+
GWHAAZE00000008	exon	20812804	20812935	+
GWHAAZE00000008	exon	20813689	20813743	+
GWHAAZE00000008	exon	20813886	20814226	+
GWHAAZE00000008	CDS	20802199	20802406	+
GWHAAZE00000008	CDS	20806257	20806734	+
GWHAAZE00000008	CDS	20809902	20809992	+
GWHAAZE00000008	CDS	20811094	20811141	+
GWHAAZE00000008	CDS	20811586	20811644	+
GWHAAZE00000008	CDS	20812610	20812685	+
GWHAAZE00000008	CDS	20812804	20812935	+
GWHAAZE00000008	CDS	20813689	20813743	+
GWHAAZE00000008	CDS	20813886	20814226	+

Transcript Sequence
>GWHTAAZE027525 ATGGGCGTGCCAGCGATCTGCTGGAGTTTTTCAAGAGTGGGTTTCCCGGTTAGGAAGTGGTGTGTTCTGGACAAGGCTTTGCTAGATGATTTTCCGCTGGCGTGGGGTGCGCCTGATTGTAAAGCTTGTGAAATTAGAGGTGGTACTTGTGGGGTTAAGAGTAGTACTGAGATGAAAATTCATTGCTTCATTCCTAGCAGTAAATCTGGCAAATCAATGGCTTATAGGCGTAGTCTCGCCTTCAGAGCGAAACTCTACGCTCAAAATCGATTTAGCCCATCATTTGCTTACATTCACAACGATGATGATCATAGAAAGCATCAATCTCATAATGAAGACCCAAGCATCAATAATTTCCTTCAAAAAAGATCCTTCGCTAGCAGCATGAACACTTCGGTAGGGTTTGGTGCTCTATTTCAAGATCAGACATGTTCACATTTATTTGCTCCGACGATGAGTAGTTCTTTTTTGGCTAGACATATGTCGACTACTGTTGGTGAAGGGGCGGGTAAGATTGATTACATGACTGATGTTGCTGAAGTTCTGGCGGATAAGACTGTGGAAGCTGTGGCTTCACAGGTTCCTGCTGTGAGTGAAGTTGCAGTTGCTGCTGCGGATTCTTGGTTTCCGGTTGCGGCTTTGCAGTATTTTATTGATGGCATTCATAATCTTACTGGCTTAAATTGGTGGGCTAGCATAGTTATTACAACTCTTGTGATTCGTGGGTTCACAGTTCCTCTAATGATTAATCAGCTTAAAGCTACTTCAAAACTGACTCTTATGAGGCCTCGCTTGGAGGAAATTAAGCAAGAGATGCAAGATAGGGCCATGAGTCCAACAGCTGTGGCTGAAGGTCAGCAACGGATGGCGAAGATATTCAAGGAGTATGGTGTTACACCATGGACTCCGTTGAAGGGAATCTTAATTCAAGGTCCCGTCTTCCTCAGCTTTTTCTTGGCTATTCAAAATATGGTGGAAAAAGTACCGTCTTTCAAAAATGGTGGAGCATTTTGGTTTACAGATCTGACAACTCCAGATACTTTATATATCTTTCCAGTTTTAACGGCATTGACATTCTGGATAACAGTGGAGGCTATCTTCTGTTATTGGGTTACGTCCAACTTATTCTCGCTTGTATATGGACTAGATCCTCTTTTTCTTTTCTTATTTATCTTTTTTCCTACGGTAATATTTTATCCATGCCTAATTTCTTCAGTGATTAAAAGGCCTGGGGTAAAGGACTTCTTGGGTGTTCCTAAAATTCCTGTGGCACCACCTTCTACATCACCTCAACAACCTGCTTTCTCCTTTTTTGATGCGATTAAAAAATACGCAGCAGCTCAACAGCAGCTGCCTAAGCCTGCTTCATCACCCGTCGTAGCCCCCAAGCCTACGCATCAGCGAATAACCTCATCTTCAGTTATCAGTCAGAGGCTCAAAAGCTTAGAAAAAGAAGTCAAGGGAAGAAAGAAGGGCAAGAAGAGGTGA

Network for GWHGAAZE027491

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14380.7	WAK_assoc	23	65	8.40E-07
PF02096.21	60KD_IMP	229	399	2.00E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03217	yidC, spoIIIJ, OXA1, ccfA	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0032977	molecular_function	membrane insertase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.250
	SRR3591706	second leaf	19.213
	SRR3591707	mature leaf	14.197
	SRR3591708	Shoot apex	22.478
	SRR3591709	Stem	18.089
	SRR3591710	White floral bud	23.032
	SRR3591711	White flower	32.717
	SRR3591712	Green floral bud	46.440
	SRR3591713	Yellow flower	25.890
SRP173429	SRR8316895	Juvenile bud stage	17.787
	SRR8316896	Juvenile bud stage	33.120
	SRR8316897	Juvenile bud stage	13.967
	SRR8316894	Third green stage	14.901
	SRR8316900	Third green stage	46.898
	SRR8316901	Third green stage	43.628
	SRR8316898	Complete white stage	12.280
	SRR8316899	Complete white stage	31.137
	SRR8316903	Complete white stage	15.501
	SRR8316902	Silver flowering stage	13.885
	SRR8316904	Silver flowering stage	16.590
	SRR8316905	Silver flowering stage	6.644
	SRR8316906	Gold flowering stage	31.277
	SRR8316907	Gold flowering stage	30.701
	SRR8316908	Gold flowering stage	33.958
SRP132670	SRR6706286	Control	22.115
	SRR6706287	Light intensity 50%	23.191
	SRR6706288	Light intensity 20%	26.338
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.589
	CNS0095593	Slightly white alabastrum(diploid) 2	26.427
	CNS0095594	Slightly white alabastrum(diploid) 3	30.564
	CNS0095595	Whole white alabastrum(diploid) 2	30.255
	CNS0095596	Whole white alabastrum(diploid) 3	35.129
	CNS0095597	Whole white alabastrum(diploid) 4	26.098
	CNS0095598	Silvery flower (diploied) 1	14.271
	CNS0095599	Silvery flower (diploied) 2	14.089
	CNS0095600	Silvery flower (diploied) 3	24.431
	CNS0095601	Golden flower (diploid) 1	11.092
	CNS0095602	Golden flower (diploid) 2	18.968
	CNS0095603	Golden flower (diploid) 3	18.889
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.960
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.848
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.383
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.574
	CNS0095610	Silvery flower (tetraploid) 1	19.408
	CNS0095611	Silvery flower (tetraploid) 2	15.916
	CNS0095612	Silvery flower (tetraploid) 3	15.872
	CNS0095613	Golden flower (tetraploid) 1	10.048
	CNS0095614	Golden flower (tetraploid) 2	15.998
	CNS0095615	Golden flower (tetraploid) 3	13.823
CRA001975	CRR073297	Stem 1	15.998
	CRR073298	Stem 2	16.239
	CRR073299	Stem 3	13.387
	CRR073300	Leaf 1	21.614
	CRR073301	Leaf 2	24.637
	CRR073302	Leaf 3	24.172
	CRR073303	Juvenile bud 1	20.100
	CRR073304	Juvenile bud 2	15.226
	CRR073305	Juvenile bud 3	13.571
	CRR073306	Third green 1	8.306
	CRR073307	Third green 2	7.255
	CRR073308	Third green 3	6.616
	CRR073309	Second white 1	10.347
	CRR073310	Second white 2	10.551
	CRR073311	Second white 3	9.740
	CRR073312	Silver flowering 1	7.930
	CRR073313	Silver flowering 2	8.125
	CRR073314	Silver flowering 3	7.913
	CRR073315	Gold flowering 1	9.259
	CRR073316	Gold flowering 2	15.476
	CRR073317	Gold flowering 3	6.428
	CRR073318	Tawny withering 1	21.233
	CRR073319	Tawny withering 2	23.553
	CRR073320	Tawny withering 3	16.813