Gene detail

Detail information of GWHGAAZE027495

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011101037.1	0	PREDICTED: endoglucanase 6 [Sesamum indicum]
COG	YP_004908734.1	2E-75	putative endoglucanase precursor
Swissprot	tr\|Q42059\|GUN6_ARATH	0	Endoglucanase 6 (Precursor)
trEMBL	tr\|A0A022Q6W5\|A0A022Q6W5_ERYGU	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT1G64390.1	9E-152	glycosyl hydrolase 9C2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	20860140	20864289	-
GWHAAZE00000008	mRNA	20860140	20864289	-
GWHAAZE00000008	exon	20860140	20860394	-
GWHAAZE00000008	exon	20860632	20860760	-
GWHAAZE00000008	exon	20861372	20861461	-
GWHAAZE00000008	exon	20863075	20863275	-
GWHAAZE00000008	exon	20863666	20863878	-
GWHAAZE00000008	exon	20864080	20864289	-
GWHAAZE00000008	CDS	20864080	20864289	-
GWHAAZE00000008	CDS	20863666	20863878	-
GWHAAZE00000008	CDS	20863075	20863275	-
GWHAAZE00000008	CDS	20861372	20861461	-
GWHAAZE00000008	CDS	20860632	20860760	-
GWHAAZE00000008	CDS	20860140	20860394	-

Transcript Sequence
>GWHTAAZE027529 ATGAGCAAGTGTGTGAGACTCTGTTCTATGGTTCCTCTGTTTTTGCTTCTTGGCCTTGTTCCTTTGGCCCTTGCTGGTGGCCATAACTATGGCCAAGCTTTAACCAAAAGCATTCTCTTCTTTGAAGCTCAAAGATCTGGTTTTCTTCCTAGCACCCAAAGAGTCCAATGGAGAGGTCATTCTGGTCTCAATGACGGCAAGGCTAATGGGGTAAATTTGGTGGGAGGATATTATGATGCAGGGGACAATGTGAAATTTGGACTGCCCATGGCATTTACAGTAACAATGATGTCATGGAGCATAATAGAGTATGGTAAGCAAATGGCTTCAAGTGGAGAGCTTGGGCATGCCATTGATGCTGTTAAGTGGGGCACTGATTACCTAATTAAAGCTCACCCTGAACCCAATGTCCTCTATGGAGAGGTAGGTGATGGGAACACAGATCATTACTGCTGGCAAAGGCCGGAGGATATGACCACTTCACGACAAGCTTATAGGATTGACCCAAGCCGTCCTGGATCTGACCTCGCGGGAGAAACTGCCGCCGCTATGGCCGCGGCCTCCATCGTGTTCCGCCGCTACAACCCTTCATATGCTAACGAGCTTATGACTCATGCGTATCAGCTGTTTGAATTTGCGAACAAGTACAGGGGCAAATATGATAGCAGTATCACAGTGGCTCAGAAGTACTATCGATCTGTCAGTGGATATGCAGCAACAAACAATCAGTACTACTTGAACTACCTAGGGAACAATGGTGATGCACTTGGTGGTACTGGCTGGGCCATGACTGAGTTTGGTTGGGATGTTAAGTATGCTGGTGTTCAGACTCTTGTTGCCAAGTTCCTAATGGCAGGGAAAGCTGGTGGCCATGCACAAGTCTTTGGAAAGTACCAGGAGAAAGCAGAGTTCTTCATGTGTTCATGCCTTGGAAAGAGCTCTCACAATGTTCAAAAGACTCCCGGTGGCTTGATTTTCAGGCAAAGATGGAACAACTTACAGTTCGTTACAAGCGCCTCTTTCCTCCTCACTATCTACTCCGACTACCTCTCCTCTGCCGGAAAAACCCTCAAATGTTCTTCTGGTTCTCCCCTCTGA

Network for GWHGAAZE027495

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	30	351	1.60E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	298.379
	SRR3591706	second leaf	410.315
	SRR3591707	mature leaf	49.486
	SRR3591708	Shoot apex	155.018
	SRR3591709	Stem	46.740
	SRR3591710	White floral bud	18.040
	SRR3591711	White flower	6.115
	SRR3591712	Green floral bud	207.209
	SRR3591713	Yellow flower	1.409
SRP173429	SRR8316895	Juvenile bud stage	47.371
	SRR8316896	Juvenile bud stage	97.529
	SRR8316897	Juvenile bud stage	35.783
	SRR8316894	Third green stage	97.501
	SRR8316900	Third green stage	411.096
	SRR8316901	Third green stage	293.470
	SRR8316898	Complete white stage	5.243
	SRR8316899	Complete white stage	141.439
	SRR8316903	Complete white stage	8.445
	SRR8316902	Silver flowering stage	0.228
	SRR8316904	Silver flowering stage	0.503
	SRR8316905	Silver flowering stage	0.165
	SRR8316906	Gold flowering stage	0.516
	SRR8316907	Gold flowering stage	0.335
	SRR8316908	Gold flowering stage	1.042
SRP132670	SRR6706286	Control	154.490
	SRR6706287	Light intensity 50%	185.862
	SRR6706288	Light intensity 20%	188.764
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.337
	CNS0095593	Slightly white alabastrum(diploid) 2	38.911
	CNS0095594	Slightly white alabastrum(diploid) 3	23.058
	CNS0095595	Whole white alabastrum(diploid) 2	34.279
	CNS0095596	Whole white alabastrum(diploid) 3	33.156
	CNS0095597	Whole white alabastrum(diploid) 4	15.459
	CNS0095598	Silvery flower (diploied) 1	12.306
	CNS0095599	Silvery flower (diploied) 2	10.006
	CNS0095600	Silvery flower (diploied) 3	2.080
	CNS0095601	Golden flower (diploid) 1	9.835
	CNS0095602	Golden flower (diploid) 2	8.633
	CNS0095603	Golden flower (diploid) 3	6.237
	CNS0095604	Slightly white alabastrum(tetraploid) 1	79.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.260
	CNS0095606	Slightly white alabastrum(tetraploid) 3	320.597
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.679
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.764
	CNS0095609	Whole white alabastrum(tetraploid) 3	228.308
	CNS0095610	Silvery flower (tetraploid) 1	1.750
	CNS0095611	Silvery flower (tetraploid) 2	6.060
	CNS0095612	Silvery flower (tetraploid) 3	3.930
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	5.261
	CNS0095615	Golden flower (tetraploid) 3	0.075
CRA001975	CRR073297	Stem 1	279.418
	CRR073298	Stem 2	410.077
	CRR073299	Stem 3	324.120
	CRR073300	Leaf 1	484.068
	CRR073301	Leaf 2	380.505
	CRR073302	Leaf 3	387.586
	CRR073303	Juvenile bud 1	137.454
	CRR073304	Juvenile bud 2	36.119
	CRR073305	Juvenile bud 3	118.589
	CRR073306	Third green 1	1.700
	CRR073307	Third green 2	0.437
	CRR073308	Third green 3	1.366
	CRR073309	Second white 1	0.727
	CRR073310	Second white 2	0.607
	CRR073311	Second white 3	0.714
	CRR073312	Silver flowering 1	0.204
	CRR073313	Silver flowering 2	0.159
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.935
	CRR073316	Gold flowering 2	9.049
	CRR073317	Gold flowering 3	15.791
	CRR073318	Tawny withering 1	121.236
	CRR073319	Tawny withering 2	76.548
	CRR073320	Tawny withering 3	50.076