Detail information of GWHGAAZE027502


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273198.10PREDICTED: high mobility group B protein 6 [Vitis vinifera]
Swissprottr|Q9T012|HMG13_ARATH2E-147High mobility group B protein 13
trEMBLtr|F6HUS4|F6HUS4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58240.1}
TAIR10AT4G23800.22E-68HMG (high mobility group) box protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2101671721020085-
GWHAAZE00000008mRNA2101671721020085-
GWHAAZE00000008exon2101671721016842-
GWHAAZE00000008exon2101699221017076-
GWHAAZE00000008exon2101756621017663-
GWHAAZE00000008exon2101776521018001-
GWHAAZE00000008exon2101861121018716-
GWHAAZE00000008exon2101880621019077-
GWHAAZE00000008exon2101918521019198-
GWHAAZE00000008exon2101952121020085-
GWHAAZE00000008CDS2101952121020085-
GWHAAZE00000008CDS2101918521019198-
GWHAAZE00000008CDS2101880621019077-
GWHAAZE00000008CDS2101861121018716-
GWHAAZE00000008CDS2101776521018001-
GWHAAZE00000008CDS2101756621017663-
GWHAAZE00000008CDS2101699221017076-
GWHAAZE00000008CDS2101671721016842-
Transcript Sequence

Network for GWHGAAZE027502

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00505.20HMG_box1922381.00E-11
PF00505.20HMG_box2923584.90E-18
PF00505.20HMG_box4204882.40E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHMG

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.056
SRR3591706second leaf8.941
SRR3591707mature leaf0.696
SRR3591708Shoot apex111.664
SRR3591709Stem29.790
SRR3591710White floral bud5.873
SRR3591711White flower1.614
SRR3591712Green floral bud9.912
SRR3591713Yellow flower0.533
SRP173429 SRR8316895Juvenile bud stage 20.706
SRR8316896Juvenile bud stage 19.837
SRR8316897Juvenile bud stage 10.815
SRR8316894Third green stage 9.189
SRR8316900Third green stage 9.743
SRR8316901Third green stage 8.090
SRR8316898Complete white stage 0.241
SRR8316899Complete white stage 4.704
SRR8316903Complete white stage 1.839
SRR8316902Silver flowering stage0.083
SRR8316904Silver flowering stage0.413
SRR8316905Silver flowering stage0.080
SRR8316906Gold flowering stage 0.080
SRR8316907Gold flowering stage 0.305
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control8.314
SRR6706287Light intensity 50%8.107
SRR6706288Light intensity 20%8.037
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.505
CNS0095593Slightly white alabastrum(diploid) 215.277
CNS0095594Slightly white alabastrum(diploid) 311.388
CNS0095595Whole white alabastrum(diploid) 27.855
CNS0095596Whole white alabastrum(diploid) 33.781
CNS0095597Whole white alabastrum(diploid) 45.638
CNS0095598Silvery flower (diploied) 19.137
CNS0095599Silvery flower (diploied) 27.058
CNS0095600Silvery flower (diploied) 33.189
CNS0095601Golden flower (diploid) 12.567
CNS0095602Golden flower (diploid) 21.972
CNS0095603Golden flower (diploid) 32.435
CNS0095604Slightly white alabastrum(tetraploid) 115.423
CNS0095605Slightly white alabastrum(tetraploid) 211.877
CNS0095606Slightly white alabastrum(tetraploid) 326.383
CNS0095607Whole white alabastrum(tetraploid) 19.812
CNS0095608Whole white alabastrum(tetraploid) 23.440
CNS0095609Whole white alabastrum(tetraploid) 34.250
CNS0095610Silvery flower (tetraploid) 11.464
CNS0095611Silvery flower (tetraploid) 21.241
CNS0095612Silvery flower (tetraploid) 30.536
CNS0095613Golden flower (tetraploid) 10.335
CNS0095614Golden flower (tetraploid) 20.559
CNS0095615Golden flower (tetraploid) 30.138
CRA001975CRR073297Stem 119.134
CRR073298Stem 222.676
CRR073299Stem 321.742
CRR073300Leaf 111.437
CRR073301Leaf 27.534
CRR073302Leaf 33.363
CRR073303Juvenile bud 13.271
CRR073304Juvenile bud 21.401
CRR073305Juvenile bud 32.837
CRR073306Third green 10.113
CRR073307Third green 20.042
CRR073308Third green 30.204
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.326
CRR073316Gold flowering 20.551
CRR073317Gold flowering 30.084
CRR073318Tawny withering 120.439
CRR073319Tawny withering 215.535
CRR073320Tawny withering 322.377