Gene detail

Detail information of GWHGAAZE027507

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010658983.1	0	PREDICTED: protein SPA1-RELATED 2 isoform X1 [Vitis vinifera]
COG	YP_007155721.1	3E-12	WD-40 repeat-containing protein
Swissprot	tr\|Q9T014\|SPA2_ARATH	0	Protein SPA1-RELATED 2
trEMBL	tr\|W9SEM2\|W9SEM2_9ROSA	0	Protein SPA1-RELATED 2 {ECO:0000313\|EMBL:EXC02946.1}
TAIR10	AT4G11110.1	0	SPA1-related 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21107757	21115580	+
GWHAAZE00000008	mRNA	21107757	21115580	+
GWHAAZE00000008	exon	21107757	21108578	+
GWHAAZE00000008	exon	21108682	21109158	+
GWHAAZE00000008	exon	21109784	21109941	+
GWHAAZE00000008	exon	21111108	21111729	+
GWHAAZE00000008	exon	21112307	21112429	+
GWHAAZE00000008	exon	21113238	21113555	+
GWHAAZE00000008	exon	21113996	21114055	+
GWHAAZE00000008	exon	21115389	21115580	+
GWHAAZE00000008	CDS	21107757	21108578	+
GWHAAZE00000008	CDS	21108682	21109158	+
GWHAAZE00000008	CDS	21109784	21109941	+
GWHAAZE00000008	CDS	21111108	21111729	+
GWHAAZE00000008	CDS	21112307	21112429	+
GWHAAZE00000008	CDS	21113238	21113555	+
GWHAAZE00000008	CDS	21113996	21114055	+
GWHAAZE00000008	CDS	21115389	21115580	+

Transcript Sequence
>GWHTAAZE027541 ATGGACGATGAAGTGGATGACGAAGTTACTGCAATTGAAGCTGGCACTCGTAGACAACTACGAAGGAAAGAGAGCGAGTACTTGTTAAATCCCGACAACGCCGAGATGCTAGAATTTCATGGGATGGTTATTCCCAATGAGGGTTTCGATAGAATAGGTGGATCTGAACATGCAAGTGCCAGCCCTCACCATCTCGAAGATGGTGGGGTCGTGGTTGAAGAGTTAACAGTGAAAAATTACAATGACGAAAATTTAGCTATAATCGGTACCTCAAACAATAGAGATAAAAAGAATCATTGGCAGCATTTATATCAAATAGCAGGTGGATCTGGAATTGGGGGTTCTCATTCTCATGGTGATGGTGATTACAGAGACAGCAATAAGGGAATTCCCAGTGTTAGGGAGGATATGGGATATGCCAATTTTCAAGAGTTCTTGGATAAACAAACGAATTTGAAGGCGGATGAAGTTGTGGGAAATTTGAGTAGTGAAAATAAACCCAATTCAAGTAATTCATTATTGCCTCCTGTCGGAATCCGGACAAAAATACTATCCAAATCTGGGTTTTCTGAGTTTTTTGTTAAAAGTACGTTAAAGGGCAAGGGAGTTGTATGTAGAGGTCCAGCTCGAGAAACAGTTGCTGCTGAATTGACAGGCCAGATTTATCCGAAGGCTGCTAGTATTAGTGATGTGAAACCCGATGCATCGTTGAAACTGAGACGAGAAATTGTTGTGCCTCCTTCGCACGGTATTGCTGTGCCTTGCCAGGGTCTTCGTCCCAAGGCTTTTAATGGAGGGGTCAACTTTAAGAGAATGGCTAAAATACGGCCATCTTACTTCAGATTGTCGCCTTCGAATCAGGTTATGTACATTGGATCATATGTTGAGAAAGAAATTGTTACGAATATTACGGATTGTAATATTCACCACTCAAATAATGACAGAAATGGGAAGAGGCCACTAGAAGAAAGTACTTTCCCTGTTGTTAGTAAATGGGCAGGTAAGAGAAAGTTTGGGGAGAACACAAACACTATTAGACAGTGGCCTCAATTTCTAAATAGATCTGCAAATGATACAAAGGTCAGTATTAATGAATTCAATGAAGAGTGTGCCTCTGAATCAGATTATATGAGCTCGATCAAGTCCAATGAATGTTACGTGTCTAACAAACCCCTACTGTTGTCAACTTCTGTAAGTGATCCAATGGAAGAGAAGTGGTATTCCAGTCCTGAAGAGCTCAACGAAAGGTGTTGCACATTTTCCTCAAATATCTACTGTCTTGGGATCCTTCTGTTTGAGTTACTTGGATCTTTTGAATCTGGAAGAGCTCATGCTGTTGCAATGTGTGATCTGCGTCATAGGATTCTTCCTCCAAATATGCTCTCAGAGAATCCCAAGGAAGCTGGGTTCTGTCTGTGGCTGCTTCATCCTGAACCATCATCACGTCCTACAACCAGGGAAATCCTAAAATCCGAGGTTTTAAGTGGAATTCAAGAATTATCTGGAGACGAATTATCATCATCTATTGATCAAGAGGATGCTGAATCAGATTTGTTATTACATTTTCTCGCATCAGTAAGAGAACAAAAGCAGAATAATGCCACCAAGTTAGTTGAAGAAATTAGGTTCTTAGAAGCAGATATTCAAGAAGTTGAGAGGAGGCAGCCAAGAAAACCCTCGAGTCTTTCTTCTGTATCTTATGATGAAATTAGGTTGAAGAGGAATATTAGTCAGCTTGAAAGTGCCTACATCTCTGTGAGATCCAATGTTCATCTTTCTAATAATGACATGCCAACTCGCGCTAATAAAGAATTGTTGAAAAGCCAAGAGAATTGGTGTCCGATGCGTAATTTTGAAGAGAAACATGAACCGTTGGATCGGCTAGGGGTTTTCTTTAATGGTTTGTGCAAGTACGCTCGCTACAGTAAGTTTGAAGTATGTGGGCTAATGAGGAATGGTGATTTTAATACTTCGGCAAATGTTATATGCTCTCTGGATTTTGACCGGGACGAGGACTTTTTTGCTGCTGCTGGAGTGTCAAAGAAAATAAAGATTTACGATTATTGCGCTCTTAAATGGTTATGGGATGCAGGAACCGGTCAAGGGATTTCTCAATTCAAAGAGCACAGTAAAAGGGCTTGGTCTGTTGACTTCTCTCAAGTCAATCCCACAACTTTAGCCAGTGGAAGTGATGATGGTTCTAAGAACAGCTTATGCACTGTTAGAAATGTCGCAAATGTTTGCTGTGTTCAGTTCTCAACCGCCTCCTCTAATTTGCTTGCGTTTGGCTCCGCGGATTACAAAACCTACTGCTATGATCTTCGTAATGTTTCAGTCCCTTGGTGTATATTATCCGGTCACGACAGAGCTGTTAGTTTTGTGAAATTCTTGGACTCGGAAACCCTAGTTTCTGCATCCACTGACAACACACTAAAGATTTGGGACCTCAATAAAACCAATTCTGCTGGTTTATCAGCAAATGCTTGCAACTTAACCCTTCAAGGCCATACTAATGAGAAGAACTTTGTGGGGTTATCTGTTGCTGATGGATATGTTGTGTGTGGTTCAGAGACAAATGAGGTGTATGCTTACTATAGAACTCTGCCAATGCCAATCACTTCCCACAAATTCGGATCCATTGATCAGATATCTGGTAAAGAAACTGATGATGACAATGGCCATTTTGTTTCCAGCGTCTGCTGGCGACGAAAGTCAGATACAGTAGTCGCCACTAATTCCACTGGATGCATAAAATTATTAAAGATGGTTTGA

Network for GWHGAAZE027507

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	659	687	0.26
PF00400.33	WD40	783	815	0.0037

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K16240	SPA1	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.716
	SRR3591706	second leaf	28.813
	SRR3591707	mature leaf	34.984
	SRR3591708	Shoot apex	18.189
	SRR3591709	Stem	22.100
	SRR3591710	White floral bud	19.641
	SRR3591711	White flower	30.579
	SRR3591712	Green floral bud	20.824
	SRR3591713	Yellow flower	21.822
SRP173429	SRR8316895	Juvenile bud stage	13.426
	SRR8316896	Juvenile bud stage	16.371
	SRR8316897	Juvenile bud stage	5.788
	SRR8316894	Third green stage	11.077
	SRR8316900	Third green stage	28.208
	SRR8316901	Third green stage	25.556
	SRR8316898	Complete white stage	12.780
	SRR8316899	Complete white stage	41.909
	SRR8316903	Complete white stage	20.081
	SRR8316902	Silver flowering stage	10.171
	SRR8316904	Silver flowering stage	19.035
	SRR8316905	Silver flowering stage	8.578
	SRR8316906	Gold flowering stage	23.666
	SRR8316907	Gold flowering stage	14.638
	SRR8316908	Gold flowering stage	20.509
SRP132670	SRR6706286	Control	24.169
	SRR6706287	Light intensity 50%	25.080
	SRR6706288	Light intensity 20%	27.085
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.245
	CNS0095593	Slightly white alabastrum(diploid) 2	7.044
	CNS0095594	Slightly white alabastrum(diploid) 3	6.447
	CNS0095595	Whole white alabastrum(diploid) 2	7.991
	CNS0095596	Whole white alabastrum(diploid) 3	8.380
	CNS0095597	Whole white alabastrum(diploid) 4	7.350
	CNS0095598	Silvery flower (diploied) 1	12.552
	CNS0095599	Silvery flower (diploied) 2	10.483
	CNS0095600	Silvery flower (diploied) 3	37.849
	CNS0095601	Golden flower (diploid) 1	9.797
	CNS0095602	Golden flower (diploid) 2	25.946
	CNS0095603	Golden flower (diploid) 3	27.334
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.140
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.060
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.415
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.442
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.140
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.601
	CNS0095610	Silvery flower (tetraploid) 1	27.529
	CNS0095611	Silvery flower (tetraploid) 2	33.087
	CNS0095612	Silvery flower (tetraploid) 3	17.794
	CNS0095613	Golden flower (tetraploid) 1	7.621
	CNS0095614	Golden flower (tetraploid) 2	19.442
	CNS0095615	Golden flower (tetraploid) 3	20.791
CRA001975	CRR073297	Stem 1	16.918
	CRR073298	Stem 2	17.035
	CRR073299	Stem 3	13.141
	CRR073300	Leaf 1	21.796
	CRR073301	Leaf 2	17.840
	CRR073302	Leaf 3	16.185
	CRR073303	Juvenile bud 1	17.008
	CRR073304	Juvenile bud 2	15.824
	CRR073305	Juvenile bud 3	22.294
	CRR073306	Third green 1	10.893
	CRR073307	Third green 2	6.787
	CRR073308	Third green 3	12.679
	CRR073309	Second white 1	9.244
	CRR073310	Second white 2	16.616
	CRR073311	Second white 3	14.502
	CRR073312	Silver flowering 1	8.584
	CRR073313	Silver flowering 2	7.813
	CRR073314	Silver flowering 3	7.962
	CRR073315	Gold flowering 1	8.616
	CRR073316	Gold flowering 2	16.709
	CRR073317	Gold flowering 3	6.059
	CRR073318	Tawny withering 1	11.065
	CRR073319	Tawny withering 2	6.094
	CRR073320	Tawny withering 3	8.641