Detail information of GWHGAAZE027508


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009763317.11.25559E-95PREDICTED: ethylene-responsive transcription factor CRF2 [Nicotiana sylvestris]
Swissprottr|Q9SUQ2|CRF2_ARATH5E-50Ethylene-responsive transcription factor CRF2
trEMBLtr|M1AWS3|M1AWS3_SOLTU7E-95Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400032058}
TAIR10AT4G23750.25E-43cytokinin response factor 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2116563921166550-
GWHAAZE00000008mRNA2116563921166550-
GWHAAZE00000008exon2116647821166550-
GWHAAZE00000008exon2116563921166420-
GWHAAZE00000008CDS2116647821166550-
GWHAAZE00000008CDS2116563921166420-
Transcript Sequence

Network for GWHGAAZE027508

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.21AP2741231.90E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0003677molecular_functionDNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE027508.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301234567891011Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.715
SRR3591706second leaf2.024
SRR3591707mature leaf0.382
SRR3591708Shoot apex9.688
SRR3591709Stem5.405
SRR3591710White floral bud0.866
SRR3591711White flower2.096
SRR3591712Green floral bud0.807
SRR3591713Yellow flower0.104
SRP173429 SRR8316895Juvenile bud stage 2.780
SRR8316896Juvenile bud stage 4.806
SRR8316897Juvenile bud stage 0.960
SRR8316894Third green stage 0.753
SRR8316900Third green stage 0.214
SRR8316901Third green stage 0.396
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.002
SRR8316903Complete white stage 0.713
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.319
SRR8316908Gold flowering stage 0.125
SRP132670SRR6706286Control0.345
SRR6706287Light intensity 50%0.167
SRR6706288Light intensity 20%0.185
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.064
CNS0095593Slightly white alabastrum(diploid) 21.673
CNS0095594Slightly white alabastrum(diploid) 32.556
CNS0095595Whole white alabastrum(diploid) 21.036
CNS0095596Whole white alabastrum(diploid) 30.817
CNS0095597Whole white alabastrum(diploid) 40.803
CNS0095598Silvery flower (diploied) 17.152
CNS0095599Silvery flower (diploied) 28.603
CNS0095600Silvery flower (diploied) 33.119
CNS0095601Golden flower (diploid) 19.722
CNS0095602Golden flower (diploid) 25.834
CNS0095603Golden flower (diploid) 35.047
CNS0095604Slightly white alabastrum(tetraploid) 10.672
CNS0095605Slightly white alabastrum(tetraploid) 21.242
CNS0095606Slightly white alabastrum(tetraploid) 31.579
CNS0095607Whole white alabastrum(tetraploid) 10.560
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.116
CNS0095610Silvery flower (tetraploid) 10.236
CNS0095611Silvery flower (tetraploid) 20.625
CNS0095612Silvery flower (tetraploid) 30.405
CNS0095613Golden flower (tetraploid) 10.178
CNS0095614Golden flower (tetraploid) 20.222
CNS0095615Golden flower (tetraploid) 30.036
CRA001975CRR073297Stem 13.828
CRR073298Stem 22.105
CRR073299Stem 34.331
CRR073300Leaf 10.102
CRR073301Leaf 20.656
CRR073302Leaf 30.382
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.125
CRR073306Third green 10.041
CRR073307Third green 20.069
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.034
CRR073311Second white 30.202
CRR073312Silver flowering 10.115
CRR073313Silver flowering 20.127
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.016
CRR073316Gold flowering 21.259
CRR073317Gold flowering 31.648
CRR073318Tawny withering 10.969
CRR073319Tawny withering 23.144
CRR073320Tawny withering 31.810