Gene detail

Detail information of GWHGAAZE027511

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631394.1	3.20246E-56	PREDICTED: common plant regulatory factor 1 isoform X3 [Vitis vinifera]
Swissprot	tr\|P42776\|GBF3_ARATH	6E-36	G-box-binding factor 3
trEMBL	tr\|D7TVB9\|D7TVB9_VITVI	1E-56	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34444.3}
TAIR10	AT2G46270.1	1E-31	G-box binding factor 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21246827	21250744	-
GWHAAZE00000008	mRNA	21246827	21250744	-
GWHAAZE00000008	exon	21250575	21250744	-
GWHAAZE00000008	exon	21249857	21249902	-
GWHAAZE00000008	exon	21249688	21249736	-
GWHAAZE00000008	exon	21249140	21249300	-
GWHAAZE00000008	exon	21248446	21248523	-
GWHAAZE00000008	exon	21248198	21248323	-
GWHAAZE00000008	exon	21246827	21247207	-
GWHAAZE00000008	CDS	21250575	21250744	-
GWHAAZE00000008	CDS	21249857	21249902	-
GWHAAZE00000008	CDS	21249688	21249736	-
GWHAAZE00000008	CDS	21249140	21249300	-
GWHAAZE00000008	CDS	21248446	21248523	-
GWHAAZE00000008	CDS	21248198	21248323	-
GWHAAZE00000008	CDS	21247067	21247207	-
GWHAAZE00000008	three_prime_UTR	21246827	21247066	-

Transcript Sequence
>GWHTAAZE027545 ATGCAGGTTGCAAATCCTTTGAGTATAGGGTTGACTTCTAAATCATCAGATGACATTGATCAAAGCTTGTCAAAGAAGCTGAAGAGGTTGGATGGTCGTGCTGTGTCAGTAGGCAATAATGGACCTGAGGTTGATGCTGAAGGATCGACCCACGAGGAGGCATCACAGAGTGTTGGTATTGATGCATCCAGTGACGGAAGTGACGGGAACACTGGAGGACACCAACTTCAAATGCAGAGTAATTCAATGAGTGCGTTCTCCACTGAACATGATCGGAAAGTCCATGCACAGGCCAGCTTCACAGCAGTAGCAGAAGCAAATATTACTTCCATTAGGATCCCTGTGATCCGTGTGGCTCCTGATAATGTTGCAGGAAATTCAGTGGGTTCCCAAAATGGGAAATCAGATATTGAAATCTGGGTGAAGGATGAACGGCAGCTAAAACGAGAAAGGAGGAAACAGGCAAACAGAGAATCTGCTAGGAGGTCTAGGTTAAGAAAACAGGCCGAGATTGAGGACCTGATGGAGAGATATGAATCCTATAAAATGGAGAATCTGGCCCTTAAATCTGAAAAAAATCAACTGACCGAGGACATGGATAAGGCAAGGCTTGAAAACGCTGCATTAATGGAAAAGCTGAATAACGCGCAACTTGGACAGCCCAAAAAACTGGCTCCAGATCGAACTGCATCCAAACAGACCCTATATGACAGTCAAAATGAGAGAAAAGAATCTGTAACCCTTGAAGACACTACTGCTGCAAAAGACTAATGAAGGACTTGTGGTGCTGATGTGAAGACATTCATCTCATCATGAATTGTTGTTAACTATGTAAGTTTAGTCGAAGTGACTCGAAGCTCAATTAACTTGTATAATGGATTTAGATTAGATGGGGTTAGCAAAGGAAGAGAGTAGGTAGCTTATAACCGAAAATATAATCCCCATATATCAGAGTTTAGTTATATTTCTATAGGGGTCATAGATGTCCTAATTAGCATGGGATTTGTATTT

Network for GWHGAAZE027511

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	144	206	3.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.907
	SRR3591706	second leaf	0.113
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.991
	SRR3591709	Stem	0.173
	SRR3591710	White floral bud	2.753
	SRR3591711	White flower	1.228
	SRR3591712	Green floral bud	0.812
	SRR3591713	Yellow flower	1.352
SRP173429	SRR8316895	Juvenile bud stage	2.195
	SRR8316896	Juvenile bud stage	4.250
	SRR8316897	Juvenile bud stage	1.871
	SRR8316894	Third green stage	1.414
	SRR8316900	Third green stage	2.353
	SRR8316901	Third green stage	2.889
	SRR8316898	Complete white stage	0.990
	SRR8316899	Complete white stage	0.639
	SRR8316903	Complete white stage	2.748
	SRR8316902	Silver flowering stage	2.257
	SRR8316904	Silver flowering stage	1.196
	SRR8316905	Silver flowering stage	0.539
	SRR8316906	Gold flowering stage	0.750
	SRR8316907	Gold flowering stage	0.768
	SRR8316908	Gold flowering stage	0.531
SRP132670	SRR6706286	Control	2.240
	SRR6706287	Light intensity 50%	1.680
	SRR6706288	Light intensity 20%	1.564
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.382
	CNS0095593	Slightly white alabastrum(diploid) 2	3.947
	CNS0095594	Slightly white alabastrum(diploid) 3	6.271
	CNS0095595	Whole white alabastrum(diploid) 2	5.214
	CNS0095596	Whole white alabastrum(diploid) 3	3.493
	CNS0095597	Whole white alabastrum(diploid) 4	4.188
	CNS0095598	Silvery flower (diploied) 1	1.018
	CNS0095599	Silvery flower (diploied) 2	1.200
	CNS0095600	Silvery flower (diploied) 3	0.892
	CNS0095601	Golden flower (diploid) 1	0.713
	CNS0095602	Golden flower (diploid) 2	0.635
	CNS0095603	Golden flower (diploid) 3	0.860
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.106
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.016
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.729
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.785
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.521
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.935
	CNS0095610	Silvery flower (tetraploid) 1	0.974
	CNS0095611	Silvery flower (tetraploid) 2	1.506
	CNS0095612	Silvery flower (tetraploid) 3	3.781
	CNS0095613	Golden flower (tetraploid) 1	0.741
	CNS0095614	Golden flower (tetraploid) 2	0.787
	CNS0095615	Golden flower (tetraploid) 3	1.503
CRA001975	CRR073297	Stem 1	3.177
	CRR073298	Stem 2	2.468
	CRR073299	Stem 3	1.467
	CRR073300	Leaf 1	3.349
	CRR073301	Leaf 2	3.099
	CRR073302	Leaf 3	0.775
	CRR073303	Juvenile bud 1	2.047
	CRR073304	Juvenile bud 2	1.608
	CRR073305	Juvenile bud 3	0.510
	CRR073306	Third green 1	1.531
	CRR073307	Third green 2	2.142
	CRR073308	Third green 3	2.419
	CRR073309	Second white 1	0.290
	CRR073310	Second white 2	0.539
	CRR073311	Second white 3	0.114
	CRR073312	Silver flowering 1	0.455
	CRR073313	Silver flowering 2	0.304
	CRR073314	Silver flowering 3	0.262
	CRR073315	Gold flowering 1	1.122
	CRR073316	Gold flowering 2	1.195
	CRR073317	Gold flowering 3	0.161
	CRR073318	Tawny withering 1	1.375
	CRR073319	Tawny withering 2	0.446
	CRR073320	Tawny withering 3	1.461