Detail information of GWHGAAZE027525


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010658515.14.7134E-131PREDICTED: reticulon-like protein B2 [Vitis vinifera]
Swissprottr|Q9SUT9|RTNLB_ARATH8E-111Reticulon-like protein B2
trEMBLtr|D7TV84|D7TV84_VITVI2E-131Reticulon-like protein {ECO:0000256|RuleBase:RU210713}
TAIR10AT4G23630.12E-86VIRB2-interacting protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2152637721528706-
GWHAAZE00000008mRNA2152637721528706-
GWHAAZE00000008exon2152637721526546-
GWHAAZE00000008exon2152666021526729-
GWHAAZE00000008exon2152722821527369-
GWHAAZE00000008exon2152748121527661-
GWHAAZE00000008exon2152852021528706-
GWHAAZE00000008CDS2152852021528706-
GWHAAZE00000008CDS2152748121527661-
GWHAAZE00000008CDS2152722821527369-
GWHAAZE00000008CDS2152666021526729-
GWHAAZE00000008CDS2152637721526546-
Transcript Sequence

Network for GWHGAAZE027525

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0142


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02453.18Reticulon642197.30E-60
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf445.905
SRR3591706second leaf391.689
SRR3591707mature leaf490.618
SRR3591708Shoot apex299.660
SRR3591709Stem501.876
SRR3591710White floral bud791.297
SRR3591711White flower517.938
SRR3591712Green floral bud585.760
SRR3591713Yellow flower315.194
SRP173429 SRR8316895Juvenile bud stage 187.906
SRR8316896Juvenile bud stage 250.342
SRR8316897Juvenile bud stage 126.535
SRR8316894Third green stage 124.669
SRR8316900Third green stage 406.944
SRR8316901Third green stage 376.536
SRR8316898Complete white stage 432.301
SRR8316899Complete white stage 817.788
SRR8316903Complete white stage 591.904
SRR8316902Silver flowering stage262.265
SRR8316904Silver flowering stage368.184
SRR8316905Silver flowering stage179.332
SRR8316906Gold flowering stage 402.552
SRR8316907Gold flowering stage 417.609
SRR8316908Gold flowering stage 443.091
SRP132670SRR6706286Control535.803
SRR6706287Light intensity 50%548.250
SRR6706288Light intensity 20%614.536
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1284.524
CNS0095593Slightly white alabastrum(diploid) 2344.790
CNS0095594Slightly white alabastrum(diploid) 3240.265
CNS0095595Whole white alabastrum(diploid) 2327.105
CNS0095596Whole white alabastrum(diploid) 3329.168
CNS0095597Whole white alabastrum(diploid) 4324.045
CNS0095598Silvery flower (diploied) 1347.812
CNS0095599Silvery flower (diploied) 2335.127
CNS0095600Silvery flower (diploied) 3562.896
CNS0095601Golden flower (diploid) 1289.268
CNS0095602Golden flower (diploid) 2410.944
CNS0095603Golden flower (diploid) 3410.821
CNS0095604Slightly white alabastrum(tetraploid) 1283.830
CNS0095605Slightly white alabastrum(tetraploid) 2243.475
CNS0095606Slightly white alabastrum(tetraploid) 3444.571
CNS0095607Whole white alabastrum(tetraploid) 1201.955
CNS0095608Whole white alabastrum(tetraploid) 2224.640
CNS0095609Whole white alabastrum(tetraploid) 3367.946
CNS0095610Silvery flower (tetraploid) 1493.649
CNS0095611Silvery flower (tetraploid) 2474.256
CNS0095612Silvery flower (tetraploid) 3425.019
CNS0095613Golden flower (tetraploid) 1281.229
CNS0095614Golden flower (tetraploid) 2375.772
CNS0095615Golden flower (tetraploid) 3329.385
CRA001975CRR073297Stem 1298.543
CRR073298Stem 2308.089
CRR073299Stem 3426.473
CRR073300Leaf 1436.702
CRR073301Leaf 2437.496
CRR073302Leaf 3574.179
CRR073303Juvenile bud 1799.401
CRR073304Juvenile bud 2829.100
CRR073305Juvenile bud 3777.347
CRR073306Third green 1686.710
CRR073307Third green 2844.751
CRR073308Third green 3651.443
CRR073309Second white 1498.945
CRR073310Second white 2326.629
CRR073311Second white 3247.440
CRR073312Silver flowering 1307.822
CRR073313Silver flowering 2418.605
CRR073314Silver flowering 3245.494
CRR073315Gold flowering 1421.353
CRR073316Gold flowering 2362.036
CRR073317Gold flowering 3455.942
CRR073318Tawny withering 1422.205
CRR073319Tawny withering 2358.111
CRR073320Tawny withering 3431.571