Gene detail

Detail information of GWHGAAZE027528

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006344018.1	9.7055E-178	PREDICTED: meiotic recombination protein SPO11-2-like [Solanum tuberosum]
Swissprot	tr\|Q9M4A1\|SPO12_ARATH	5E-159	Meiotic recombination protein SPO11-2
trEMBL	tr\|A0A061G5K0\|A0A061G5K0_THECC	3E-175	Sporulation 11-2 {ECO:0000313\|EMBL:EOY24856.1}
TAIR10	AT1G63990.1	3E-128	sporulation 11-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21595665	21603611	+
GWHAAZE00000008	mRNA	21595665	21603611	+
GWHAAZE00000008	exon	21595665	21595728	+
GWHAAZE00000008	exon	21599094	21599176	+
GWHAAZE00000008	exon	21599286	21599369	+
GWHAAZE00000008	exon	21599953	21600082	+
GWHAAZE00000008	exon	21600241	21600359	+
GWHAAZE00000008	exon	21601788	21601916	+
GWHAAZE00000008	exon	21602426	21602520	+
GWHAAZE00000008	exon	21602611	21602687	+
GWHAAZE00000008	exon	21602967	21603094	+
GWHAAZE00000008	exon	21603477	21603611	+
GWHAAZE00000008	CDS	21595665	21595728	+
GWHAAZE00000008	CDS	21599094	21599176	+
GWHAAZE00000008	CDS	21599286	21599369	+
GWHAAZE00000008	CDS	21599953	21600082	+
GWHAAZE00000008	CDS	21600241	21600359	+
GWHAAZE00000008	CDS	21601788	21601916	+
GWHAAZE00000008	CDS	21602426	21602520	+
GWHAAZE00000008	CDS	21602611	21602687	+
GWHAAZE00000008	CDS	21602967	21603094	+
GWHAAZE00000008	CDS	21603477	21603611	+

Transcript Sequence
>GWHTAAZE027562 ATGGTACAAAGCGGCCGTGGAGCAGAATTTGAATCTCTCTACTTCCAAGACTACAATTGCATGGATGCAATGGGAGAAGTGTACAAATCATCCATCTTCTTCACTGATCAACATCTCTGTTACGCCGATATACTTCCTCCTTCACAGGTTCGAGCCAGAATGGAAGTTGCAGTCCTCAATTTCCTCCGGAATTTGAATTCTCCATCTCCAGCAATCTCTGATCTCGCCCTGATCACAAGAAGGACAAGTAACAGCAGAGTGAGTCTCGGACTGATGAGTGAAATTTCGTGGATTTTTCTCTCTCATTCATTTTGTAAAAGGTCTTTGATGAGAGAGAACACTGCTAAAGCTTTCATTAGAGTGTGGAAGGTAATGGAGATGTGCTATAAGATTTTGGTTGAGGAGAAAAGAGTCACTCAGAGAGAACTGTTCTACAAGTTACTTTGTGATTCACCAGATTATTTCACCTCTCAATTGCAGGAGCCCGACCAAGAGGTTGTGGATTGTTCTGCATGTGGATCTTCAGGCTATGCTATTTCAGGTGACCTGAATTTATTGGAGAAACTTATCATGAAGACAGATGCTCGGTATATTTTCGTGGTGGAAAAGCAAGTGTTTACTTCTTTTAAAATGCCAAACAGGTTTCTTCTTCATCGAATGAGCCGAGCTTTTCCTGATATGCCAATTTTAGGGATTGTTGACTGGAACCCTGCTGGATTATCGATACTTTGCACATTCAAGTATGGAAGCATAGGGATGGGCCTTGAAGCTTACAGATACGCTTGCAATGTCAAGTGGCTGGGATTGCGAAAGGATGACCTACAGCTTATACCAGAAGAATCTTTTATCCCACTGAAGGCACGGGATTTGCAGATCGCCAAAAGCTTGGTCTCTTCTGAAATCTTGCAGGATAACTACAAAGAAGAGTTGGAGGCAATGGTACAAAGCGGCCGTAGAGCAGAAATTGAAGCTCTGTACTTCCATGGCTACGATTTCTTAGCTAAGTACTTGGCTAACAAAATTGTACAAACCCATTACATCTAG

Network for GWHGAAZE027528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04406.15	TP6A_N	116	158	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10878	SPO11	Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0000737	biological_process	DNA catabolic process, endonucleolytic
GO:0006259	biological_process	DNA metabolic process
GO:0005694	cellular_component	chromosome
GO:0003677	molecular_function	DNA binding
GO:0003824	molecular_function	catalytic activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.582
	SRR3591706	second leaf	0.250
	SRR3591707	mature leaf	0.117
	SRR3591708	Shoot apex	1.159
	SRR3591709	Stem	1.141
	SRR3591710	White floral bud	1.388
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.640
	SRR3591713	Yellow flower	0.867
SRP173429	SRR8316895	Juvenile bud stage	0.689
	SRR8316896	Juvenile bud stage	0.917
	SRR8316897	Juvenile bud stage	0.744
	SRR8316894	Third green stage	0.208
	SRR8316900	Third green stage	0.434
	SRR8316901	Third green stage	0.530
	SRR8316898	Complete white stage	0.172
	SRR8316899	Complete white stage	0.325
	SRR8316903	Complete white stage	0.024
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.033
	SRR8316905	Silver flowering stage	0.009
	SRR8316906	Gold flowering stage	0.083
	SRR8316907	Gold flowering stage	0.109
	SRR8316908	Gold flowering stage	0.195
SRP132670	SRR6706286	Control	0.162
	SRR6706287	Light intensity 50%	0.295
	SRR6706288	Light intensity 20%	0.242
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.712
	CNS0095593	Slightly white alabastrum(diploid) 2	1.085
	CNS0095594	Slightly white alabastrum(diploid) 3	0.948
	CNS0095595	Whole white alabastrum(diploid) 2	1.136
	CNS0095596	Whole white alabastrum(diploid) 3	1.050
	CNS0095597	Whole white alabastrum(diploid) 4	1.023
	CNS0095598	Silvery flower (diploied) 1	0.802
	CNS0095599	Silvery flower (diploied) 2	0.947
	CNS0095600	Silvery flower (diploied) 3	0.184
	CNS0095601	Golden flower (diploid) 1	0.131
	CNS0095602	Golden flower (diploid) 2	0.222
	CNS0095603	Golden flower (diploid) 3	0.177
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.198
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.041
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.763
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.487
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.089
	CNS0095610	Silvery flower (tetraploid) 1	0.375
	CNS0095611	Silvery flower (tetraploid) 2	0.325
	CNS0095612	Silvery flower (tetraploid) 3	0.127
	CNS0095613	Golden flower (tetraploid) 1	0.378
	CNS0095614	Golden flower (tetraploid) 2	0.182
	CNS0095615	Golden flower (tetraploid) 3	0.196
CRA001975	CRR073297	Stem 1	2.693
	CRR073298	Stem 2	1.684
	CRR073299	Stem 3	0.352
	CRR073300	Leaf 1	0.227
	CRR073301	Leaf 2	0.807
	CRR073302	Leaf 3	0.115
	CRR073303	Juvenile bud 1	0.417
	CRR073304	Juvenile bud 2	0.110
	CRR073305	Juvenile bud 3	0.332
	CRR073306	Third green 1	0.081
	CRR073307	Third green 2	0.033
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.005
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.144
	CRR073316	Gold flowering 2	0.372
	CRR073317	Gold flowering 3	0.453
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.299
	CRR073320	Tawny withering 3	0.229