Gene detail

Detail information of GWHGAAZE027534

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010089054.1	0	Mitogen-activated protein kinase 4 [Morus notabilis]
COG	YP_002560205.1	1E-21	hypothetical protein MCCL_0802
Swissprot	tr\|Q5J4W4\|MPK2_ORYSJ	0	Mitogen-activated protein kinase 2
trEMBL	tr\|W8E964\|W8E964_9ROSA	0	Mitogen-activated protein kinase {ECO:0000256\|RuleBase:RU361165}
TAIR10	AT4G01370.1	2E-151	MAP kinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21686701	21692919	+
GWHAAZE00000008	mRNA	21686701	21692919	+
GWHAAZE00000008	exon	21686701	21686830	+
GWHAAZE00000008	exon	21688885	21688997	+
GWHAAZE00000008	exon	21689853	21689990	+
GWHAAZE00000008	exon	21690624	21690956	+
GWHAAZE00000008	exon	21692066	21692159	+
GWHAAZE00000008	exon	21692747	21692919	+
GWHAAZE00000008	CDS	21686701	21686830	+
GWHAAZE00000008	CDS	21688885	21688997	+
GWHAAZE00000008	CDS	21689853	21689990	+
GWHAAZE00000008	CDS	21690624	21690956	+
GWHAAZE00000008	CDS	21692066	21692159	+
GWHAAZE00000008	CDS	21692747	21692919	+

Transcript Sequence
>GWHTAAZE027568 ATGGAGAAGAGCGATGGTAAAATGAAAGGAGCGCTAGTTCATGGAGGTCTGTACGTACGGTACAATGTGTACGGTAACTTATTTGAGGTCTCTAGCAAGTATGTTCCTCCTTTACGACCTATTGGCAGAGATACACATGAAGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGTATAGATGCCAAACGAACATTAAGAGAAATTAAGCTCCTTCGTCACATGAGTCATGAAAATGTTATTGCCATAAGGGACATTATACGACCACCAAGGAGGGACAGCTTTAATGATGTGTACATTGTTTATGAATTGATGGACACTGATCTTCATCAAATCATACGTTCTAATCAACCATTGACCGATGACCATTGTCAGTACTTTTTGTACCAGCTGTTACGAGGACTGAAATATGTGCACTCAGCAAAGGTCTTGCATCGTGACCTTAAGCCTAGCAATTTGCTTTTGAATGCAAATTGTGACCTTAAGATAGGAGATTTCGGACTGGCAAGAACAACCTCGGAAACTGATTTTATGACTGAATATGTGGTCACCCGTTGGTATCGAGCACCGGAGTTACTGCTGAATTGTTCAGAGTACACAGCTGCAATTGATATATGGTCTGTTGGGTGCATACTTGGTGAAATAATGACCCGAGAACCTTTGTTCCCTGGTAAAGATTATGTTCATCAGCTAAGACTCATCACAGAGCAGCAATTCTCAGCTAGATTCCCTAACATGTCTCATTTAGCTATTGATTTGCTTGAGAAAATGCTCGTGTTTGATCCCAACAAGCGCATTACAGTTGACGAGGCTCTTTGTCACCCTTACCTATCATCTCTTCACGATATCAATGATGAGCCGTTTTGTACCAACCCTTTCAGTTTAGACTTTGAGCAGCCTTCGTTTAACGAAGAGAACATTAAAGAGCTCATTTGGAGGGAATCGGTGAAGTTCAATCCGGAGCCAATCCATTAG

Network for GWHGAAZE027534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	43	279	2.20E-66

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_MAPK

KEGG pathway

KO	Enzyme	pathway	mapID
K20600	MPK4	MAPK signaling pathway - plant	map04016
K20600	MPK4	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004707	molecular_function	MAP kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.072
	SRR3591706	second leaf	10.740
	SRR3591707	mature leaf	17.364
	SRR3591708	Shoot apex	15.549
	SRR3591709	Stem	35.944
	SRR3591710	White floral bud	8.949
	SRR3591711	White flower	11.690
	SRR3591712	Green floral bud	12.637
	SRR3591713	Yellow flower	22.894
SRP173429	SRR8316895	Juvenile bud stage	16.216
	SRR8316896	Juvenile bud stage	22.331
	SRR8316897	Juvenile bud stage	10.855
	SRR8316894	Third green stage	7.277
	SRR8316900	Third green stage	16.330
	SRR8316901	Third green stage	21.189
	SRR8316898	Complete white stage	5.278
	SRR8316899	Complete white stage	32.802
	SRR8316903	Complete white stage	8.796
	SRR8316902	Silver flowering stage	2.455
	SRR8316904	Silver flowering stage	5.071
	SRR8316905	Silver flowering stage	2.709
	SRR8316906	Gold flowering stage	11.955
	SRR8316907	Gold flowering stage	4.912
	SRR8316908	Gold flowering stage	14.708
SRP132670	SRR6706286	Control	5.342
	SRR6706287	Light intensity 50%	5.942
	SRR6706288	Light intensity 20%	5.924
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.403
	CNS0095593	Slightly white alabastrum(diploid) 2	16.735
	CNS0095594	Slightly white alabastrum(diploid) 3	14.712
	CNS0095595	Whole white alabastrum(diploid) 2	11.333
	CNS0095596	Whole white alabastrum(diploid) 3	7.366
	CNS0095597	Whole white alabastrum(diploid) 4	8.669
	CNS0095598	Silvery flower (diploied) 1	16.233
	CNS0095599	Silvery flower (diploied) 2	19.272
	CNS0095600	Silvery flower (diploied) 3	14.263
	CNS0095601	Golden flower (diploid) 1	29.600
	CNS0095602	Golden flower (diploid) 2	28.113
	CNS0095603	Golden flower (diploid) 3	25.410
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.153
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.881
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.838
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.219
	CNS0095610	Silvery flower (tetraploid) 1	5.210
	CNS0095611	Silvery flower (tetraploid) 2	6.238
	CNS0095612	Silvery flower (tetraploid) 3	2.692
	CNS0095613	Golden flower (tetraploid) 1	5.178
	CNS0095614	Golden flower (tetraploid) 2	7.328
	CNS0095615	Golden flower (tetraploid) 3	2.756
CRA001975	CRR073297	Stem 1	13.546
	CRR073298	Stem 2	11.095
	CRR073299	Stem 3	10.655
	CRR073300	Leaf 1	11.929
	CRR073301	Leaf 2	11.105
	CRR073302	Leaf 3	8.848
	CRR073303	Juvenile bud 1	8.815
	CRR073304	Juvenile bud 2	3.714
	CRR073305	Juvenile bud 3	8.390
	CRR073306	Third green 1	0.634
	CRR073307	Third green 2	0.679
	CRR073308	Third green 3	1.261
	CRR073309	Second white 1	0.891
	CRR073310	Second white 2	1.323
	CRR073311	Second white 3	1.405
	CRR073312	Silver flowering 1	2.415
	CRR073313	Silver flowering 2	2.895
	CRR073314	Silver flowering 3	2.756
	CRR073315	Gold flowering 1	7.893
	CRR073316	Gold flowering 2	7.151
	CRR073317	Gold flowering 3	6.352
	CRR073318	Tawny withering 1	15.696
	CRR073319	Tawny withering 2	12.926
	CRR073320	Tawny withering 3	11.391