Gene detail

Detail information of GWHGAAZE027541

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12052.1	8.78243E-70	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SK53\|COL3_ARATH	0.00000002	Zinc finger protein CONSTANS-LIKE 3
trEMBL	tr\|A0A068UUS6\|A0A068UUS6_COFCA	3E-70	Coffea canephora DH200=94 genomic scaffold, scaffold_62 {ECO:0000313\|EMBL:CDP12052.1}
TAIR10	AT1G63820.1	1E-33	CCT motif family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21790603	21792704	+
GWHAAZE00000008	mRNA	21790603	21792704	+
GWHAAZE00000008	exon	21790603	21790857	+
GWHAAZE00000008	exon	21790941	21791117	+
GWHAAZE00000008	exon	21792076	21792264	+
GWHAAZE00000008	exon	21792537	21792704	+
GWHAAZE00000008	CDS	21790603	21790857	+
GWHAAZE00000008	CDS	21790941	21791117	+
GWHAAZE00000008	CDS	21792076	21792264	+
GWHAAZE00000008	CDS	21792537	21792704	+

Transcript Sequence
>GWHTAAZE027575 ATGGCTTCTGATCTTTTTCCATTTGATGGGTCTTTCTTCTCTGATCAATTCTCCCCTTTCACGGACCCCATTGATATCCTTCAAGAACTTGAGAACAACCCAATTCAAGAAAACCAAATTGATGAAATCTCTTGTTTGGATCAAATTTCGTCAACCCTCCTCTCAAATTCCCCTCCTAGTCGCCAACTGGAAAATCTTTCCCTCTACCAAACACCATCCCATTTGGGAAATTCCCAGGATTTCAATTCCATGGAAAGGAGTTATAGTAGCAATTCTTTTGATGGAAGGAGGAGTGGGTTTTTGTTTCAGCCTGGGTTTGGTAGTTTAATGGAGGAATCTCATAGTTTTCAGAGCCAAGTGTTGAGCTCCTCACCTGAAGATGGATTCTTTAGTGATCAAGTGAGAAGGGTTTGTAGCACTGGTGATTTACAAAATATAAAAACAAGCAGCAGCCAAGCAAAACAGAGGTTGTCATCAAGTCCATTAGCAACAGAGAGTTCATTGATAATGAATGAGGACCCAAATTCCAAAGTGGGACGTTACTCTGCTGAAGAGAGGAAAGAGAGAATTCACAGATACAGAGCCAAACGTAACCACAGAAACTTCAACAAAACTATTAAGACTGTAATTTTTGTCTTTGTTTTTCGGATTCAGTATGCATGTCGAAAGACACTAGCGGACAACCGACCGAGGATACGTGGCAGATTTGCTCGCAATGATGAAGCTCCAGGGACATTTCAAAAGCGGCAACTTTTAATCGATACGAAGACGAAGATGATCTTTGGGTAA

Network for GWHGAAZE027541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06203.15	CCT	214	239	1.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.755
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.049
	SRR3591709	Stem	0.461
	SRR3591710	White floral bud	1.123
	SRR3591711	White flower	0.630
	SRR3591712	Green floral bud	0.782
	SRR3591713	Yellow flower	2.101
SRP173429	SRR8316895	Juvenile bud stage	0.080
	SRR8316896	Juvenile bud stage	0.019
	SRR8316897	Juvenile bud stage	0.063
	SRR8316894	Third green stage	0.519
	SRR8316900	Third green stage	0.355
	SRR8316901	Third green stage	1.012
	SRR8316898	Complete white stage	0.105
	SRR8316899	Complete white stage	0.506
	SRR8316903	Complete white stage	0.312
	SRR8316902	Silver flowering stage	0.499
	SRR8316904	Silver flowering stage	1.336
	SRR8316905	Silver flowering stage	0.165
	SRR8316906	Gold flowering stage	3.347
	SRR8316907	Gold flowering stage	0.655
	SRR8316908	Gold flowering stage	2.234
SRP132670	SRR6706286	Control	0.750
	SRR6706287	Light intensity 50%	0.471
	SRR6706288	Light intensity 20%	0.650
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.464
	CNS0095593	Slightly white alabastrum(diploid) 2	0.722
	CNS0095594	Slightly white alabastrum(diploid) 3	0.463
	CNS0095595	Whole white alabastrum(diploid) 2	0.800
	CNS0095596	Whole white alabastrum(diploid) 3	0.839
	CNS0095597	Whole white alabastrum(diploid) 4	0.772
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.917
	CNS0095600	Silvery flower (diploied) 3	0.577
	CNS0095601	Golden flower (diploid) 1	0.601
	CNS0095602	Golden flower (diploid) 2	1.763
	CNS0095603	Golden flower (diploid) 3	1.307
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.303
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.143
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.307
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.003
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.486
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.432
	CNS0095610	Silvery flower (tetraploid) 1	0.667
	CNS0095611	Silvery flower (tetraploid) 2	0.293
	CNS0095612	Silvery flower (tetraploid) 3	0.257
	CNS0095613	Golden flower (tetraploid) 1	1.371
	CNS0095614	Golden flower (tetraploid) 2	0.799
	CNS0095615	Golden flower (tetraploid) 3	0.356
CRA001975	CRR073297	Stem 1	0.233
	CRR073298	Stem 2	0.461
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	1.555
	CRR073301	Leaf 2	0.625
	CRR073302	Leaf 3	2.069
	CRR073303	Juvenile bud 1	0.813
	CRR073304	Juvenile bud 2	1.163
	CRR073305	Juvenile bud 3	0.533
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.382
	CRR073308	Third green 3	0.634
	CRR073309	Second white 1	0.142
	CRR073310	Second white 2	0.559
	CRR073311	Second white 3	0.352
	CRR073312	Silver flowering 1	0.438
	CRR073313	Silver flowering 2	0.369
	CRR073314	Silver flowering 3	0.239
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	1.801
	CRR073320	Tawny withering 3	0.762