Gene detail

Detail information of GWHGAAZE027543

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004245584.1	PREDICTED: beta-adaptin-like protein C [Solanum lycopersicum]
Swissprot	tr\|O81742\|APBLC_ARATH	Beta-adaptin-like protein C
trEMBL	tr\|K4CPC9\|K4CPC9_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc08g081320.2.1}
TAIR10	AT4G23460.1	Adaptin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21858909	21868517	+
GWHAAZE00000008	mRNA	21858909	21868517	+
GWHAAZE00000008	exon	21858909	21859043	+
GWHAAZE00000008	exon	21859219	21859469	+
GWHAAZE00000008	exon	21860561	21860696	+
GWHAAZE00000008	exon	21861120	21861299	+
GWHAAZE00000008	exon	21861424	21861516	+
GWHAAZE00000008	exon	21861898	21862109	+
GWHAAZE00000008	exon	21862225	21862288	+
GWHAAZE00000008	exon	21862403	21862582	+
GWHAAZE00000008	exon	21862734	21862826	+
GWHAAZE00000008	exon	21864830	21865242	+
GWHAAZE00000008	exon	21865407	21865596	+
GWHAAZE00000008	exon	21866697	21866900	+
GWHAAZE00000008	exon	21868218	21868517	+
GWHAAZE00000008	CDS	21858909	21859043	+
GWHAAZE00000008	CDS	21859219	21859469	+
GWHAAZE00000008	CDS	21860561	21860696	+
GWHAAZE00000008	CDS	21861120	21861299	+
GWHAAZE00000008	CDS	21861424	21861516	+
GWHAAZE00000008	CDS	21861898	21862109	+
GWHAAZE00000008	CDS	21862225	21862288	+
GWHAAZE00000008	CDS	21862403	21862582	+
GWHAAZE00000008	CDS	21862734	21862826	+
GWHAAZE00000008	CDS	21864830	21865242	+
GWHAAZE00000008	CDS	21865407	21865596	+
GWHAAZE00000008	CDS	21866697	21866900	+
GWHAAZE00000008	CDS	21868218	21868517	+

Transcript Sequence
>GWHTAAZE027577 ATGATTGGGCTTCTTTTTCAGGATTCACAGGACCCAAATCCTTTGATTCGTGCATTGGCTGTGAGGACAATGGGATGCATCCGTGTTGATAAAATCACTGAATATCTTTGTGATCCTCTTCAGAGGTGCCTCAAGGATGATGATCCTTATGTTCGCAAGACAGCAGCTATATGTGTTGCTAAACTTTACGATATAAATGCTGAGCTAGTTGAGGATAGGGGCTTTTTGGAAGCTCTTAAGGATTTGATATCAGACAATAATCCAATGGTTGTAGCAAATGCTGTCGCTGCTCTTGCAGAGATCCAAGATAACAGTGCCAGGCCTATCTTTGAAATCACCAGCCACACACTTTCAAAGCTTCTTACTGCCCTAAATGAATGCACTGAGTGGGGTCAAGTTTTCATATTGGATGCTCTTTCTAAATACAAGGCAGCTGATGCACGTGAAGCCGAGAATATTGTGGAGCGAGTTACTCCACGGCTCCAACATGCAAATTGTGCAGTTGTTCTCTCAGCTGTTAAGATGATCCTTCAACAAATGGAACTCATCACCAGTACTGACGTGGTTCGAAATCTCTGCAAGAAAATGGCGCCTCCTCTTGTGACATTACTTTCTGCAGAACCGGAGATTCAATATGTTGCATTACGAAACATCAACCTCATCGTACAGAGAAGGCCTACAATCCTTGCCCATGAAATTAAGGTGTTTTTCTGCAAGTACAATGATCCAATTTATGTGAAGATGGAAAAGTTAGAAATTATGATAAAACTTGCTTCAGACCGAAATATAGACCAGGTTCTATTGGAGTTCAAAGAGTATGCCACAGAAGTAGATGTCGATTTTGTCAGAAAAGCTGTTCGTGCTATTGGGCGTTGTGCCATCAAGTTAGAGAGAGCTGCTGAGCGTTGCATTAGCGTTCTGCTTGAGCTCATCAAGATTAAAGTAAACTATGTTGTTCAAGAAGCTATTATAGTCATTAAAGATATTTTTAGAAGATACCCAAATACTTATGAGTCTATCATTGCAACACTCTGTGAGAGCTTAGATACGTTAGATGAGCCCGAGGCTAAGGCGTCAATGATTTGGATAATTGGTGAATATGCTGAAAGAATCGATAATGCTGATGAGCTCCTTGAAAGCTTTTTGGAGAGTTTCCCCGAAGAACCTGCACAAGTCCAGTTACAGTTATTGACAGCAACTGTCAAACTTTTTCTTAAGAAGCCAACTGAAGGTCCACAGCAGATGATTCAGGTCGTCTTGAATAATGCCACCGTGGAGACTGACAATCCGGATCTGCGAGATCGTGCATACATATATTGGCGTCTTCTTTCAACTGATCCTGAGGCTGCTAAGGATGTCGTATTAGCTGAGAAACCTGTGATAAGTGACGATTCAAACCTCCTCGATACTTCTCTTCTCGATGAGCTTCTAGCCAACATTGCTACTTTATCATCTGTGTATCACAAGCCACCAGATGCATTTGTGACCCGTGTGAAGACTGTACAGAGAACTGAAGATGATGACTTTCCTGATGGTGGTGAAGCCGGGTATTCGGAGTCACCTTCTCATGCACCTGGTGCATCACCGCCGGCTAGTTCAAGTAGCAGTTCTTATGCTGTTGGAGCTCAACCGGCTTCCACAGCCGTTGTGCCTGCAGGTCCAGCTCCTGTGCCCGATTTACTTGACCTGATGGGTTTGGAGGGTGATAATAGTAGCAATGCTCTTGTCTCTGTTGATCAGCCTGCAGAAACTGCTGGACCTCCTCTGCCTGTATTATTACCTGCAGCAACAGGTCAAGGGTTGCAAATAAGCGCACAGCTTATACGAAGAGATGGTCAAATATTTTACAGCTTATTGTTTGATAACAATACACAAGTTCCTCTTGATGGGTTTATGATTCAGTTCAACAAAAATACTTTTGGTCTTGCAGCTGCCGGACCGCTCCAGGTCCCACAATTGCAACCTGGGACCTCCACAAAGGCCCTTCTTCCTATGGTTTTGTTCCAGAATGTAGCTCCTGGTCCACCAAACACTCTTCTGCAGGTGGCTGTGAAAAATAATCAACAGCCCGTTTGGTACTTCAATGATAAAGTCTCATTGCTGGTTTTCTTTTCTGAGGATGGGAGAATGGAGCGTACTACATTTCTCGAGACTTGGAAATCATTGCCTGATACAAATGAGGTCTCAAAGGAATTCCCAGGCATTGTATTGAACAGCGTTGAAGCAACCCTAGACCGGCTAGCTACATCAAACATGTATTTTATAGCAAAACGAAAGCATGCAAATCAAGATGTGTTGTATCTATCGGCCAAAATCCCTCGAGGAATCCCTTTCTTGATCGAGCTCACGGCGGTAATGGGAATTCCTGGCCTCAAGTGCGCAATCAAAACTCCTAGCCCCGAAATGGCTCCTCTTTTCTTTGAAGCCCTCGAGGATTTCCTCAAGAGTTGA

Network for GWHGAAZE027543

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01602.21	Adaptin_N	5	445	1.80E-130
PF02883.21	Alpha_adaptinC2	599	694	2.00E-08
PF09066.11	B2-adapt-app_C	705	814	1.70E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12392	AP1B1	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0015031	biological_process	protein transport
GO:0030131	cellular_component	clathrin adaptor complex
GO:0030117	cellular_component	membrane coat
GO:0030276	molecular_function	clathrin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	114.105
	SRR3591706	second leaf	54.016
	SRR3591707	mature leaf	38.029
	SRR3591708	Shoot apex	78.919
	SRR3591709	Stem	77.277
	SRR3591710	White floral bud	74.916
	SRR3591711	White flower	72.281
	SRR3591712	Green floral bud	103.519
	SRR3591713	Yellow flower	60.002
SRP173429	SRR8316895	Juvenile bud stage	40.858
	SRR8316896	Juvenile bud stage	59.644
	SRR8316897	Juvenile bud stage	33.960
	SRR8316894	Third green stage	28.132
	SRR8316900	Third green stage	88.445
	SRR8316901	Third green stage	82.355
	SRR8316898	Complete white stage	25.992
	SRR8316899	Complete white stage	69.521
	SRR8316903	Complete white stage	52.062
	SRR8316902	Silver flowering stage	29.683
	SRR8316904	Silver flowering stage	48.070
	SRR8316905	Silver flowering stage	19.231
	SRR8316906	Gold flowering stage	61.811
	SRR8316907	Gold flowering stage	53.510
	SRR8316908	Gold flowering stage	64.907
SRP132670	SRR6706286	Control	63.178
	SRR6706287	Light intensity 50%	69.453
	SRR6706288	Light intensity 20%	73.063
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.452
	CNS0095593	Slightly white alabastrum(diploid) 2	50.885
	CNS0095594	Slightly white alabastrum(diploid) 3	51.238
	CNS0095595	Whole white alabastrum(diploid) 2	62.032
	CNS0095596	Whole white alabastrum(diploid) 3	62.270
	CNS0095597	Whole white alabastrum(diploid) 4	53.979
	CNS0095598	Silvery flower (diploied) 1	43.952
	CNS0095599	Silvery flower (diploied) 2	42.143
	CNS0095600	Silvery flower (diploied) 3	82.581
	CNS0095601	Golden flower (diploid) 1	39.631
	CNS0095602	Golden flower (diploid) 2	85.292
	CNS0095603	Golden flower (diploid) 3	81.136
	CNS0095604	Slightly white alabastrum(tetraploid) 1	69.468
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.967
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.589
	CNS0095607	Whole white alabastrum(tetraploid) 1	66.324
	CNS0095608	Whole white alabastrum(tetraploid) 2	62.278
	CNS0095609	Whole white alabastrum(tetraploid) 3	86.366
	CNS0095610	Silvery flower (tetraploid) 1	69.055
	CNS0095611	Silvery flower (tetraploid) 2	71.165
	CNS0095612	Silvery flower (tetraploid) 3	66.525
	CNS0095613	Golden flower (tetraploid) 1	38.397
	CNS0095614	Golden flower (tetraploid) 2	61.251
	CNS0095615	Golden flower (tetraploid) 3	77.298
CRA001975	CRR073297	Stem 1	83.529
	CRR073298	Stem 2	81.534
	CRR073299	Stem 3	81.691
	CRR073300	Leaf 1	106.989
	CRR073301	Leaf 2	93.192
	CRR073302	Leaf 3	88.570
	CRR073303	Juvenile bud 1	107.004
	CRR073304	Juvenile bud 2	84.164
	CRR073305	Juvenile bud 3	115.678
	CRR073306	Third green 1	62.090
	CRR073307	Third green 2	56.091
	CRR073308	Third green 3	65.773
	CRR073309	Second white 1	64.984
	CRR073310	Second white 2	69.610
	CRR073311	Second white 3	68.640
	CRR073312	Silver flowering 1	71.350
	CRR073313	Silver flowering 2	72.261
	CRR073314	Silver flowering 3	68.757
	CRR073315	Gold flowering 1	25.655
	CRR073316	Gold flowering 2	45.832
	CRR073317	Gold flowering 3	38.334
	CRR073318	Tawny withering 1	91.338
	CRR073319	Tawny withering 2	74.206
	CRR073320	Tawny withering 3	100.937