Gene detail

Detail information of GWHGAAZE027546

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010660547.1	PREDICTED: puromycin-sensitive aminopeptidase isoform X1 [Vitis vinifera]
COG	YP_004984429.1	aminopeptidase N
Swissprot	tr\|Q8H0S9\|PSA_ARATH	Puromycin-sensitive aminopeptidase
trEMBL	tr\|W9QHB9\|W9QHB9_9ROSA	Aminopeptidase N {ECO:0000313\|EMBL:EXB37329.1}
TAIR10	AT1G63770.3	Peptidase M1 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21900165	21911303	+
GWHAAZE00000008	mRNA	21900165	21911303	+
GWHAAZE00000008	exon	21900165	21900245	+
GWHAAZE00000008	exon	21900959	21901045	+
GWHAAZE00000008	exon	21901177	21901221	+
GWHAAZE00000008	exon	21901308	21901448	+
GWHAAZE00000008	exon	21901953	21902028	+
GWHAAZE00000008	exon	21902242	21902318	+
GWHAAZE00000008	exon	21902853	21902966	+
GWHAAZE00000008	exon	21903068	21903142	+
GWHAAZE00000008	exon	21903479	21903586	+
GWHAAZE00000008	exon	21903673	21903885	+
GWHAAZE00000008	exon	21904003	21904064	+
GWHAAZE00000008	exon	21904159	21904186	+
GWHAAZE00000008	exon	21904293	21904379	+
GWHAAZE00000008	exon	21904499	21904524	+
GWHAAZE00000008	exon	21905040	21905103	+
GWHAAZE00000008	exon	21905210	21905290	+
GWHAAZE00000008	exon	21905396	21905443	+
GWHAAZE00000008	exon	21906051	21906062	+
GWHAAZE00000008	exon	21906167	21906223	+
GWHAAZE00000008	exon	21906343	21906452	+
GWHAAZE00000008	exon	21906907	21906987	+
GWHAAZE00000008	exon	21907080	21907263	+
GWHAAZE00000008	exon	21908150	21908301	+
GWHAAZE00000008	exon	21908391	21908529	+
GWHAAZE00000008	exon	21908622	21908768	+
GWHAAZE00000008	exon	21909360	21909441	+
GWHAAZE00000008	exon	21909533	21909748	+
GWHAAZE00000008	exon	21910045	21910118	+
GWHAAZE00000008	exon	21910642	21910758	+
GWHAAZE00000008	exon	21910876	21910947	+
GWHAAZE00000008	exon	21911223	21911303	+
GWHAAZE00000008	CDS	21900165	21900245	+
GWHAAZE00000008	CDS	21900959	21901045	+
GWHAAZE00000008	CDS	21901177	21901221	+
GWHAAZE00000008	CDS	21901308	21901448	+
GWHAAZE00000008	CDS	21901953	21902028	+
GWHAAZE00000008	CDS	21902242	21902318	+
GWHAAZE00000008	CDS	21902853	21902966	+
GWHAAZE00000008	CDS	21903068	21903142	+
GWHAAZE00000008	CDS	21903479	21903586	+
GWHAAZE00000008	CDS	21903673	21903885	+
GWHAAZE00000008	CDS	21904003	21904064	+
GWHAAZE00000008	CDS	21904159	21904186	+
GWHAAZE00000008	CDS	21904293	21904379	+
GWHAAZE00000008	CDS	21904499	21904524	+
GWHAAZE00000008	CDS	21905040	21905103	+
GWHAAZE00000008	CDS	21905210	21905290	+
GWHAAZE00000008	CDS	21905396	21905443	+
GWHAAZE00000008	CDS	21906051	21906062	+
GWHAAZE00000008	CDS	21906167	21906223	+
GWHAAZE00000008	CDS	21906343	21906452	+
GWHAAZE00000008	CDS	21906907	21906987	+
GWHAAZE00000008	CDS	21907080	21907263	+
GWHAAZE00000008	CDS	21908150	21908301	+
GWHAAZE00000008	CDS	21908391	21908529	+
GWHAAZE00000008	CDS	21908622	21908768	+
GWHAAZE00000008	CDS	21909360	21909441	+
GWHAAZE00000008	CDS	21909533	21909748	+
GWHAAZE00000008	CDS	21910045	21910118	+
GWHAAZE00000008	CDS	21910642	21910758	+
GWHAAZE00000008	CDS	21910876	21910947	+
GWHAAZE00000008	CDS	21911223	21911303	+

Transcript Sequence
>GWHTAAZE027580 ATGATGGCTCGGTTGGTTCTGCCTTGCAAAAGTTCGGGTTTATCGAAGTCATGTCTCTTGGGTTTGATCTCTTCTGCTCCTCTTCAGGCAACTTGCCGTGTTAGTTCTGTTGTGCATTCGGTAAAGAATCTCTCTAGGAGTAGGCAGTACCATTGCCTTAATTCCGAGGTCACTCACTGGAGAAATTACCAACTTTTATATCAGTCACTACCTAGGTCTAAGCAGACCAAAAGAAGGTTAATTTGTTCGGTTACAACAGAACCCTTGCCAAAGCAAGTAGAAGAATCCAAAATGGAAATGCCAAAAGAAATCTTCCTAAAAGATTACAAGTTGCCTGATTATTACTTTGATACGGTGGACCTAAAATTTTCACTCGGCGAGGAGAAAACAATAGTTTGCTCAAAGATTACTGTCGCTCCCAGAGTTGAAGGTGTTTCTGCTCCACTTGTCTTGGATGGCCATGATCTAAAGCTGGTTTCAATTAAGGTCAACGGGACGGAACTGAAGGAGGGACATTACCATGTGGACCCACGCCATTTGATTATCTCATCGCCTCCAAGTAGTAAATTTACATTGGAAATTGTAAACGAGATCCATCCCGAGAAGAACACATCGTTAGAGGGGCTTTACAAATCATCTGGGAATTTCTGTACGCAATGTGAAGCAGAGGGTTTCCGAAAAATCACATTTTATCAGGATCGTCCCGATATAATGGCAAAATACACTTGTCACATTGAAGCTGACAAATCATTGTACCCGGTTTTATTATCTAATGGAAATCTCTTAGAGCAAGGAGACCTAGAGGGAGGCAAACATTATGCTACTTGGGAGGATCCTTTCAAAAAACCTTGCTATCTTTTCGCCTTAGTTGCTGGACAGTTGGAAAGTAGAGATGATACTTTTACTACTCGTTCGGGCCGTAAGGTGGCCCTTAGAATTTGGACTCCCCCACAGGATCTGCCCAAGACTGTACATGCTATGTATTCTCTTAAGGCTGCTATGAAATGGGATGAAGATGTTTTTGGTCTTGAGTATGATCTTGATCTTTTCAATATTGTGGCTGTTCCAGATTTTAATATGGGAGCTATGGAGAACAAGAGTTTGAATCTTTTCAATTCGAAGCTTGTTTTGGCCTCTCCAGAAACTGCAACTGATGCAGATTATGCTGCAATTTTGGGTGTTATCGGCCATGAGTACTTTCACAACTGGACCGGCAACAGAGTGACATGTCGAGACTGGTTCCAGCTGAGTCTAAAGGAAGGTCTCACTGTCTTCCGTGATCAGGAATTTTCATCGGACTTAGGGAGCCGTACAGTTAAACGGATCGCTGATGTTTCAAAGCTTAGGATCTATCAATTTCCACAGGATGCTGGTCCGATGGCTCATCCTGTACGGCCCCACTCATACATTAAGGTTTATGAAAAGGGTGCGGAAGTTGTGAGGATGTACAAGACCTTATTGGGGACTCAAGGATTTAGAAAAGGCATGGATCTATATTTTAAGAGGCATGACGGGCAAGCTGTAACTTGTGAAGATTTCTATGCTGCAATGCGTGATGCAAATAATGCAGATTTCTCTAATTTCTTGTTGTGGTATTCACAAGCCGGGACACCTGTTGTGAAGGTTACTTCTTTATATAATGCAGAAGCTTGTACTTTCTCATTGAAGTTCAGTCAAGAGGTGCCACCAACCCCGGGCCAGCCATTGAAGGAGCCGATGTTCATTCCAGTGGCAATGGGACTACTTGACTCGAGTGGCAAGGACATGGCTCTCTCTTCTGTGTATCACGATGGGAAGTTGGAGTCTCTTGAAAGCAATGGTCAACCTGTTAACACAACAGTGCTTAGAGTAACAAAGCAGAAGGAAGAGGAATTCACCTTCTTGGATATATCCGAGCGTCCAATCCCATCTCTACTACGGGGATACAGTGCTCCTATCCGCCTTCATTCTGATCTCACGGACAGTGATCTCTCTTTTCTCCTTGCTCACGATTCAAATGAGTTCAACCGTTGGGAGGCGGGCCAGCTGCTAGCGAGGAAGCTGATGCTCACACTTGTGGACGATTATCAGCAAAACAAACCGTTGGTTTTGAATGAAACATTTGTGCATGGCCTTAAAAGCATACTTTGTGACTCGAGCTTAGATAAGGAATTCATTGCAAAGGCAATAACTCTTCCTGGTGAAGGAGAGATAATGGACATGATGGAAGTTGCTGACCCTGATGCCGTTCACGCAGTTCGAACTTTCATAAAAAAGAAGATTGCTTCTGAATTAAAAGAAGAGCTTCTCAACACGGTCAAGAGCAATAGGAGCTTGGAGCCTTATGAGTTCAATCATGTCAACATGGCAAGGCGTGCCCTTAAGAATATTGCCCTTGCTTATCTTGCGTCACTTGAAGATAAAGAACTAACCGAGCTTGCGCTGAATGAATATAAAACCGCCACAAATATGACGGAACAGTTTGCTGCCTTGGCGGCTATTGCTCAAATCCCTGGTAAAACCCGGGATGATGCATTGGCAGACTTTTATGACAAATGGCAGCACGACTTCCTGGTAGTCCTCTCTGTCTTTGTAATTTTTCACACTTTAAAATACATTCCTGGGAATGTTGAGAATGTTCGAAAGCTGCTAAGTCATCCGGCATTTGACCTTCGCAACCCCAACAAAGTATATTCGTTGATCGGTGGATTTTGCGGGTCGCCTGTGAATTTCCACGCGAAAGACGGGTCAGGCTACAAATTCCTTGGAGAATTGGTGGTGGAGCTAGACAAACTGAATCCCCAGGTGGCCTCTCGTATGGTGTCGGCCTTCTCTAGATGGAAGCGTTATGATCAAACCCGACAAGGCCTTGCCAAGGCACAGCTGGAGATGATTATGTCAACAAATGGGCTATCAGAAAACGTGTTCGAGATTGCCTCAAAAAGTTTAGCTGTTTGA

Network for GWHGAAZE027546

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17900.2	Peptidase_M1_N	119	286	4.10E-15
PF01433.21	Peptidase_M1	327	528	5.90E-45
PF11940.9	DUF3458	536	650	9.60E-26
PF17432.3	DUF3458_C	654	977	1.60E-115

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01256	pepN	Metabolic pathways	map01100
K01256	pepN	Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	102.165
	SRR3591706	second leaf	56.090
	SRR3591707	mature leaf	103.470
	SRR3591708	Shoot apex	82.152
	SRR3591709	Stem	89.052
	SRR3591710	White floral bud	109.245
	SRR3591711	White flower	146.963
	SRR3591712	Green floral bud	99.170
	SRR3591713	Yellow flower	130.685
SRP173429	SRR8316895	Juvenile bud stage	70.093
	SRR8316896	Juvenile bud stage	103.601
	SRR8316897	Juvenile bud stage	50.431
	SRR8316894	Third green stage	42.056
	SRR8316900	Third green stage	126.258
	SRR8316901	Third green stage	112.081
	SRR8316898	Complete white stage	52.289
	SRR8316899	Complete white stage	143.629
	SRR8316903	Complete white stage	80.354
	SRR8316902	Silver flowering stage	51.937
	SRR8316904	Silver flowering stage	76.535
	SRR8316905	Silver flowering stage	33.534
	SRR8316906	Gold flowering stage	131.055
	SRR8316907	Gold flowering stage	127.596
	SRR8316908	Gold flowering stage	146.544
SRP132670	SRR6706286	Control	124.296
	SRR6706287	Light intensity 50%	119.926
	SRR6706288	Light intensity 20%	130.793
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.478
	CNS0095593	Slightly white alabastrum(diploid) 2	59.402
	CNS0095594	Slightly white alabastrum(diploid) 3	54.476
	CNS0095595	Whole white alabastrum(diploid) 2	56.619
	CNS0095596	Whole white alabastrum(diploid) 3	59.425
	CNS0095597	Whole white alabastrum(diploid) 4	61.016
	CNS0095598	Silvery flower (diploied) 1	98.580
	CNS0095599	Silvery flower (diploied) 2	87.999
	CNS0095600	Silvery flower (diploied) 3	158.780
	CNS0095601	Golden flower (diploid) 1	82.948
	CNS0095602	Golden flower (diploid) 2	160.832
	CNS0095603	Golden flower (diploid) 3	151.497
	CNS0095604	Slightly white alabastrum(tetraploid) 1	82.364
	CNS0095605	Slightly white alabastrum(tetraploid) 2	72.254
	CNS0095606	Slightly white alabastrum(tetraploid) 3	136.406
	CNS0095607	Whole white alabastrum(tetraploid) 1	61.366
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.359
	CNS0095609	Whole white alabastrum(tetraploid) 3	127.014
	CNS0095610	Silvery flower (tetraploid) 1	194.996
	CNS0095611	Silvery flower (tetraploid) 2	194.891
	CNS0095612	Silvery flower (tetraploid) 3	212.513
	CNS0095613	Golden flower (tetraploid) 1	102.189
	CNS0095614	Golden flower (tetraploid) 2	169.474
	CNS0095615	Golden flower (tetraploid) 3	152.858
CRA001975	CRR073297	Stem 1	124.843
	CRR073298	Stem 2	114.830
	CRR073299	Stem 3	112.173
	CRR073300	Leaf 1	135.555
	CRR073301	Leaf 2	127.578
	CRR073302	Leaf 3	120.228
	CRR073303	Juvenile bud 1	130.563
	CRR073304	Juvenile bud 2	90.904
	CRR073305	Juvenile bud 3	161.450
	CRR073306	Third green 1	70.460
	CRR073307	Third green 2	47.768
	CRR073308	Third green 3	60.845
	CRR073309	Second white 1	92.371
	CRR073310	Second white 2	98.632
	CRR073311	Second white 3	112.306
	CRR073312	Silver flowering 1	103.008
	CRR073313	Silver flowering 2	104.547
	CRR073314	Silver flowering 3	105.626
	CRR073315	Gold flowering 1	93.355
	CRR073316	Gold flowering 2	161.530
	CRR073317	Gold flowering 3	96.144
	CRR073318	Tawny withering 1	89.265
	CRR073319	Tawny withering 2	87.751
	CRR073320	Tawny withering 3	77.044