Gene detail

Detail information of GWHGAAZE027549

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12039.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FN67\|Y5133_ARATH	2E-152	BTB/POZ domain-containing protein At5g41330
trEMBL	tr\|A0A068UUU4\|A0A068UUU4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_62 {ECO:0000313\|EMBL:CDP12039.1}
TAIR10	AT5G41330.1	3E-124	BTB/POZ domain with WD40/YVTN repeat-like protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	21970836	21971888	+
GWHAAZE00000008	mRNA	21970836	21971888	+
GWHAAZE00000008	exon	21970836	21971888	+
GWHAAZE00000008	CDS	21970836	21971888	+

Transcript Sequence
>GWHTAAZE027583 ATGCCACCGTTTGCAGGATCAAGGTCCCAATCAAATGGGTTTTCCAAAAGCAAGAAAACGGGATCCAATTCCGACATAGTCACCGTCGAAGTCGGTGGCCAGCTCTTTCAAACCACCAAACAAACCCTATCAATCGCCGGCCCAAAATCCCTCTTTTCTAGGGTTTTTAATTCTTCCATCCAAGAACAACGACAACAAAGCATCCCGTTCATTGATCGAGACCCAGAATTGTTCTCCATAATCCTCTCTTTCCTCCGAACAGGTAATCTCCCATCTAAAGCCAAATCATTTGATCTCCAAGATTTGATCTCAGAATCCCAATTTTACGGAATTGAATCCCTACTTATCAATTCAATTTCGGATCCATCTCAATTCGAGCCATTCAATCTTGAGGAAACTCTAATTCTGCCTTTGAACGGCCGGGATTCACCCTCGGCTATCTGCACCACGCCGTACGGGTCCCTCCATGTGGCACACGGCGGCAAGATCACATCTTTTGATTGGTCGTTGCAAAGAAAGTCAACAATCTTGACCCAATTTACGGCTGTTGATTCTCTATTAGCAATTTCCCCCAAGATTGTAGCTGCTGGAGCTACAGATTTCTCTGGGTTGCAGATTATTGATGTTGATAAGGGTTTTGTTAGAGAAACCCTAAATTGGGAGAATGTAACTAGGTCTAGCTCAACAGTTCAAGCAATTGGTTCCTCCCCGGATTTTCTTTTCACTAGTTTTGAATCGGGTCGTCGGAATTCGAATTCGATTCTTGTTTATGATATTCAGGATGGGTTTCGCCCAGTTACCGAGATTGCCCATTGTGAGATTTTCGGTGCTGATCTTGATTCCGCTATCCCTGCAACCAAACTGAAATGGGTTTCTAGTCATAATCTTTTAATGGCTTCTGGTTCTCACAGTGGACCTTACGGTGTTCATGGTAACATTAAATTTTGGGATATTAGGTCTGGTAATGTAGTTTGGGAAGTGAAGGAGAAAATCGATTGTTTTTCGGATGTAACAGTGTCAGATAATCTTTCGCCATGTTTAAGGTTGGGGTGA

Network for GWHGAAZE027549

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02214.23	BTB_2	27	118	1.80E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0051260	biological_process	protein homooligomerization
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.142
	SRR3591706	second leaf	11.574
	SRR3591707	mature leaf	6.304
	SRR3591708	Shoot apex	11.307
	SRR3591709	Stem	33.437
	SRR3591710	White floral bud	25.981
	SRR3591711	White flower	49.367
	SRR3591712	Green floral bud	11.539
	SRR3591713	Yellow flower	55.897
SRP173429	SRR8316895	Juvenile bud stage	63.445
	SRR8316896	Juvenile bud stage	18.430
	SRR8316897	Juvenile bud stage	29.925
	SRR8316894	Third green stage	7.695
	SRR8316900	Third green stage	9.253
	SRR8316901	Third green stage	13.500
	SRR8316898	Complete white stage	4.046
	SRR8316899	Complete white stage	25.973
	SRR8316903	Complete white stage	4.664
	SRR8316902	Silver flowering stage	16.067
	SRR8316904	Silver flowering stage	16.060
	SRR8316905	Silver flowering stage	8.543
	SRR8316906	Gold flowering stage	54.307
	SRR8316907	Gold flowering stage	48.739
	SRR8316908	Gold flowering stage	47.415
SRP132670	SRR6706286	Control	9.165
	SRR6706287	Light intensity 50%	17.918
	SRR6706288	Light intensity 20%	12.356
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.137
	CNS0095593	Slightly white alabastrum(diploid) 2	29.074
	CNS0095594	Slightly white alabastrum(diploid) 3	24.433
	CNS0095595	Whole white alabastrum(diploid) 2	20.755
	CNS0095596	Whole white alabastrum(diploid) 3	3.206
	CNS0095597	Whole white alabastrum(diploid) 4	13.981
	CNS0095598	Silvery flower (diploied) 1	36.100
	CNS0095599	Silvery flower (diploied) 2	63.214
	CNS0095600	Silvery flower (diploied) 3	48.259
	CNS0095601	Golden flower (diploid) 1	76.849
	CNS0095602	Golden flower (diploid) 2	80.482
	CNS0095603	Golden flower (diploid) 3	75.637
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.944
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.945
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.499
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.127
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.931
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.347
	CNS0095610	Silvery flower (tetraploid) 1	14.331
	CNS0095611	Silvery flower (tetraploid) 2	11.178
	CNS0095612	Silvery flower (tetraploid) 3	25.461
	CNS0095613	Golden flower (tetraploid) 1	20.293
	CNS0095614	Golden flower (tetraploid) 2	19.911
	CNS0095615	Golden flower (tetraploid) 3	25.130
CRA001975	CRR073297	Stem 1	18.362
	CRR073298	Stem 2	13.515
	CRR073299	Stem 3	13.352
	CRR073300	Leaf 1	14.540
	CRR073301	Leaf 2	23.502
	CRR073302	Leaf 3	9.894
	CRR073303	Juvenile bud 1	15.426
	CRR073304	Juvenile bud 2	21.007
	CRR073305	Juvenile bud 3	22.973
	CRR073306	Third green 1	29.427
	CRR073307	Third green 2	23.524
	CRR073308	Third green 3	29.032
	CRR073309	Second white 1	34.027
	CRR073310	Second white 2	36.054
	CRR073311	Second white 3	40.966
	CRR073312	Silver flowering 1	80.153
	CRR073313	Silver flowering 2	53.995
	CRR073314	Silver flowering 3	39.579
	CRR073315	Gold flowering 1	11.395
	CRR073316	Gold flowering 2	19.006
	CRR073317	Gold flowering 3	30.121
	CRR073318	Tawny withering 1	23.437
	CRR073319	Tawny withering 2	50.343
	CRR073320	Tawny withering 3	23.961