Gene detail

Detail information of GWHGAAZE027552

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631415.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Vitis vinifera]
COG	YP_004284573.1	6E-28	putative serine/threonine protein kinase
Swissprot	tr\|Q9CAD5\|YODA_ARATH	0	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|D7TVY2\|D7TVY2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34657.3}
TAIR10	AT1G63700.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	22001181	22007187	+
GWHAAZE00000008	mRNA	22001181	22007187	+
GWHAAZE00000008	exon	22001181	22001731	+
GWHAAZE00000008	exon	22002089	22002832	+
GWHAAZE00000008	exon	22003329	22003416	+
GWHAAZE00000008	exon	22003565	22003627	+
GWHAAZE00000008	exon	22003875	22004035	+
GWHAAZE00000008	exon	22004120	22004195	+
GWHAAZE00000008	exon	22004732	22004791	+
GWHAAZE00000008	exon	22004874	22004981	+
GWHAAZE00000008	exon	22005745	22005972	+
GWHAAZE00000008	exon	22006402	22006427	+
GWHAAZE00000008	exon	22006677	22007187	+
GWHAAZE00000008	CDS	22001181	22001731	+
GWHAAZE00000008	CDS	22002089	22002832	+
GWHAAZE00000008	CDS	22003329	22003416	+
GWHAAZE00000008	CDS	22003565	22003627	+
GWHAAZE00000008	CDS	22003875	22004035	+
GWHAAZE00000008	CDS	22004120	22004195	+
GWHAAZE00000008	CDS	22004732	22004791	+
GWHAAZE00000008	CDS	22004874	22004981	+
GWHAAZE00000008	CDS	22005745	22005972	+
GWHAAZE00000008	CDS	22006402	22006427	+
GWHAAZE00000008	CDS	22006677	22007187	+

Transcript Sequence
>GWHTAAZE027586 ATGCCTTCATGGTGGGGGAAGTCTTCTTCGAAAGAGGTTAAGAAGGAAGCGAACAAGGAGAGTATCATTGATACAATACAAAGGAGATTCAAAATCGCATCCGAAGAAAAGTGGAACAATAGATACAAAGGTTCACGAAGACGTACTGAAGCTATTTCAGTAAAGGTACCGCAATCTTGTGCCGAGTCTCGATCTACATCACCCTCCACTCAAGTATCGCGTTGTCAAAGTTTTGCTGAAAGGCCTCAGGCCCAACCACTCCCACTCCCTGGGGTCCGCCTGAGTAATATAAAGCGTGCTGATTCTGGGAACAGTGCATCAAGAAAACAAAGAGTAGACAGAGGCCCAAATTCACTGTCATTGTTGCCTCTTCCAAAACTAGGTGATGTACCAAATGAGCCTTATGCTGACGTTGAGACGGATATAGCTGCCGGTTCTATTTCTAGTGATAGTTCTAATTATAGTGATGATCCACCTGACTCACGTCTACTAAGCCCTCAGGCATCTGACTATGAAAATGGGAACAGAACAGCCATTAACAGTCCTTCCAGTGTTAAGGACAAGGATCACTTCCCTGTTGCCACCCTAAAGAAATCAATACAGAGGTTGAAGCCAGCCAATATTTTATCGAACAGTCAGACCGTCCCCACGTCACCACATCGGGGCCGGTCTTTAGGTTCTCATGTGCCAAATTTGCAGATTCCTCCCCATGGTGCATTTTGCAGTGCACCAGACAGCTCAAGGTCTAGCCCTTCTCGAAGTCCGATTCGGGTATTTTACCCAGAGTTGGGCACCAACTCCGGCTTTTCAGCAGCAAAGCCTCATGCAGATATAGCTTTACTCGGATCTGGGCACTGTTCTAGTCCTGGTTCGGGTCACAATTCTGGGCATAATTCAGTTGGGGGTGATATGTTTGGGCATCAGTTTTGGCAGCAGAATAGGTGTAGCCCTGAGTGTTCACCAATACCGAGTCCTAGGATGACAAGCCCGGGGCCCAGTTCGAGAATACATAGTGGTGCAGTCACCCCTCTGCATCCACGAGCTGGAGTAACTGCCACTGAATCAACTGCAAACTGGCCTGATGATGGAAAGCAACAAAGCCACAGACTTCCCCTTCCCCCTCTGTCAATCTCTAAGAATTGCCCTTTTTCTCCTTCATACTCAACTGGAACGACTCCTGTTCCAAGAAGCCCTGGTAGGGCAGAAAATCCGACGAGCCCTCCTGGTTCACGTTGGAAGAAGGGACGATTACTTGGAAGAGGCACGTTTGGACATGTTTATCTTGGTTTTAACAGTGAAAGTGGCGAGATGTGTGCTATGAAGGAGGTAACTCTATTTTCAGATGATGCAAAGTCGAAGGAAAGTGCCCAGCAGCTAGGACAAGAAATTGCATTACTAAGTCGCTTACGGCATCCAAATATTGTGCAATATTATGGGTCTGAGACGGTAGATGACAAACTATATATATACCTGGAGTATGTATCGGGTGGTTCCATTTACAAAATTCTTCAAGACTATGGCCAGTTGGGTGAAATTGCTATTCGAAGTTATACTAAACAAATTTTGTCTGGGCTTGCATATTTGCATGCTAAAAATACAGTGCATAGGGATATTAAAGGAGCAAATATACTGGTTGATCCCAATGGCCGTGTTAAATTGGCAGATTTTGGAATGGCAAAGCATATTACGGGGTACTCTTGCCCATTATCATTCAAGGGAAGCCCGTACTGGATGGCACCTGAGGTTATAAAGAATTCAAGTGGCTGCAATCTTGCTGTGGATATATGGAGCCTAGGTTGTACGGTTTTGGAGATGGCTACAACAAAACCTCCTTGGAGTCAGTATGAAGGGGTTGCTGCTATGTTTAAAATTGGGAACAGCAAGGATCTTCCGGCTATTCCTGATCATCTCTCTGACGAGGGCAAGGATTTTATAAGGATGTGTTTGCAGCGGAACCCGTCGAACCGTCCTTCTGCTGCTAAGCTTTTGGACCACGCTTTTGTTAGAAATGCGGCAATGTTGGAAAGGCCTATTACATGTCCCGAGCCTCTAGAAGCTATGAATTCTGTGAGATCAATGGGTATTGGACATGCAAGAAACCTTTTTGATGCCCATATGCCACGGAACATATCATGCCCGGTTTCGCCAATTGGGAGTCCTTTGTTGTATTCACGATCACCAAAACATACGAGTGGAAGACTATCCCCCTCTCCTATATCAAGCCCCCACACCATGTCTGGTTCATCCACACCTCTAACTGGTGGGACCGGGTCCATACCGTTTCATAACCCAAAGCCACCAACCACCTCCTACTTGTATGAAGGCATTTCTATGACTTCCCGGTCCCAAAACACCTTATATTATCAAGACCCAAAACCAGATATTTTTCGAGGGATGCCTCAAGCCTCTCCTTTGTTTCGGGACCCATCTGAAAACGGATTTCTCGGAAGTAATTTAGGGCGGTCCACTCCAGGGGATACAAGGGAATTATATGATGGACAATCAGTGCTTGCCAATCGAGTATCTCAACAGCTATTGAAGGATCACGTGAAATTGAATCCATTGTTAGAACTTAATCCCAGCTCTCCGGTGCTCAGTCGCAACAATGTAGTTTAG

Network for GWHGAAZE027552

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	413	667	1.90E-70

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
K20717	YDA	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.152
	SRR3591706	second leaf	10.255
	SRR3591707	mature leaf	10.189
	SRR3591708	Shoot apex	13.761
	SRR3591709	Stem	14.474
	SRR3591710	White floral bud	10.295
	SRR3591711	White flower	14.696
	SRR3591712	Green floral bud	10.578
	SRR3591713	Yellow flower	9.004
SRP173429	SRR8316895	Juvenile bud stage	6.634
	SRR8316896	Juvenile bud stage	12.407
	SRR8316897	Juvenile bud stage	3.375
	SRR8316894	Third green stage	4.213
	SRR8316900	Third green stage	10.304
	SRR8316901	Third green stage	8.268
	SRR8316898	Complete white stage	3.196
	SRR8316899	Complete white stage	9.712
	SRR8316903	Complete white stage	6.702
	SRR8316902	Silver flowering stage	7.713
	SRR8316904	Silver flowering stage	10.476
	SRR8316905	Silver flowering stage	5.758
	SRR8316906	Gold flowering stage	15.652
	SRR8316907	Gold flowering stage	16.446
	SRR8316908	Gold flowering stage	20.207
SRP132670	SRR6706286	Control	10.710
	SRR6706287	Light intensity 50%	10.457
	SRR6706288	Light intensity 20%	10.148
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.564
	CNS0095593	Slightly white alabastrum(diploid) 2	3.752
	CNS0095594	Slightly white alabastrum(diploid) 3	4.587
	CNS0095595	Whole white alabastrum(diploid) 2	3.122
	CNS0095596	Whole white alabastrum(diploid) 3	2.307
	CNS0095597	Whole white alabastrum(diploid) 4	2.853
	CNS0095598	Silvery flower (diploied) 1	11.643
	CNS0095599	Silvery flower (diploied) 2	11.050
	CNS0095600	Silvery flower (diploied) 3	50.152
	CNS0095601	Golden flower (diploid) 1	12.449
	CNS0095602	Golden flower (diploid) 2	32.359
	CNS0095603	Golden flower (diploid) 3	32.864
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.344
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.573
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.568
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.813
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.003
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.193
	CNS0095610	Silvery flower (tetraploid) 1	69.515
	CNS0095611	Silvery flower (tetraploid) 2	35.646
	CNS0095612	Silvery flower (tetraploid) 3	9.341
	CNS0095613	Golden flower (tetraploid) 1	12.337
	CNS0095614	Golden flower (tetraploid) 2	31.333
	CNS0095615	Golden flower (tetraploid) 3	26.189
CRA001975	CRR073297	Stem 1	14.323
	CRR073298	Stem 2	13.450
	CRR073299	Stem 3	12.137
	CRR073300	Leaf 1	10.475
	CRR073301	Leaf 2	9.365
	CRR073302	Leaf 3	7.508
	CRR073303	Juvenile bud 1	4.387
	CRR073304	Juvenile bud 2	3.748
	CRR073305	Juvenile bud 3	8.675
	CRR073306	Third green 1	2.163
	CRR073307	Third green 2	2.291
	CRR073308	Third green 3	2.716
	CRR073309	Second white 1	1.652
	CRR073310	Second white 2	2.144
	CRR073311	Second white 3	3.010
	CRR073312	Silver flowering 1	2.566
	CRR073313	Silver flowering 2	3.172
	CRR073314	Silver flowering 3	1.553
	CRR073315	Gold flowering 1	2.664
	CRR073316	Gold flowering 2	5.616
	CRR073317	Gold flowering 3	3.320
	CRR073318	Tawny withering 1	8.700
	CRR073319	Tawny withering 2	6.238
	CRR073320	Tawny withering 3	8.806