Gene detail

Detail information of GWHGAAZE027566

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002274590.2	PREDICTED: LOW QUALITY PROTEIN: GMP synthase [glutamine-hydrolyzing] [Vitis vinifera]
COG	NP_213161.1	GMP synthase
trEMBL	tr\|F6HUC3\|F6HUC3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58346.1}
TAIR10	AT1G63660.1	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	22135114	22139208	+
GWHAAZE00000008	mRNA	22135114	22139208	+
GWHAAZE00000008	exon	22135114	22135662	+
GWHAAZE00000008	exon	22136494	22136744	+
GWHAAZE00000008	exon	22136910	22137285	+
GWHAAZE00000008	exon	22137671	22137802	+
GWHAAZE00000008	exon	22138150	22138325	+
GWHAAZE00000008	exon	22139085	22139208	+
GWHAAZE00000008	CDS	22135114	22135662	+
GWHAAZE00000008	CDS	22136494	22136744	+
GWHAAZE00000008	CDS	22136910	22137285	+
GWHAAZE00000008	CDS	22137671	22137802	+
GWHAAZE00000008	CDS	22138150	22138325	+
GWHAAZE00000008	CDS	22139085	22139208	+

Transcript Sequence
>GWHTAAZE027600 ATGGAACCCGAGGCCGTAAAATCAAACCTAGTCCTAATCCTAGACTACGGTTCCCAATACACCCACCTCATCACTCGCCGAATCCGTTCCCTCTCCATTTTCTCCCTCTGCATCTCCGGCACCTCCCCTCTCAAATCCATCACCGACCTAAACCCATCAGTAATCATCCTCTCCGGCGGTCCCCACTCCGTCCACACGCCCCACGCGCCTTCCTTCCCCCATGGATTCTTGGAATACGTGGAGTCAAATGGGGTTTATGTTTTGGGGATTTGCTATGGGTTGCAGTTGATTGTGGATAGGCTTGGCGGGGAAGTTAGGGTTGGGGAGAAGCAGGAGTATGGGAGGATGGAGATTGTGGTGGAGAAGGGTGGGGGTGGGTTATTTGGGGCGAAGAGGGATGGGGATAAGCAAGTTGTTTGGATGAGCCATGGGGACGAGGCAGTGAGGTTGCCGGAAGGGTTTGAGGTGGTGGCTAGGAGCATGCAGGGGGCGGTGGCAGCGGTGGAGAATAAGAAGAGGAGGTTCTATGGGCTTCAGTATCATCCTGAGGTAACACATTCACCAGAAGGAATGGAAACACTTAGGTACTTCCTCTTTGACGTTTGTGGTGTCACTGCTGGCTGGAAGATGGAAGATGTACTAGCAGAAGAAATAAAAGTTATAAAAGGCATGGTTGGTCTTGAAGACCATGTCATTTGTGCTTTATCAGGGGGTGTGGATTCCACAGTGGCAGCCACACTTGTTCACAGGGCAATTGGAGATAGGCTTCACTGTATTTTTGTCGATAATGGTTTATTGAGGTATAAGGAGAGAGAGCGGGTAATGGATACCTTTGAAAGGGATCTCCATTTACCTGTCACTTGTGTTGATGCAACGGAGCAATTTCTTAGTGAATTAAAAGGTGTGGTAGATCCCGAGCGGAAAAGGAAAATAATTGGAAAGGAGTTCATCGGCATCTTTGATGCCTTTGCTCAAGATTTGGAAAATAAATTTGGCAAGAGACCCGCCTACTTGGTACAGGGAACCTTATATCCAGATGTAATAGAATCTTGCCCACCTCCCGGTAGTGGAAGAACACACTCGCACACAATCAAGAGCCATCATAATGTTGGCGGGCTTCCCAAGGACATGAAATTGAAACTCATTGAACCACTTAAACTATTATTTAAGGATGAGGTTCGTGAATTGGGGAGGATCTTGGAGGTTCCAGTGGGATTTCTAAAGCGTCACCCTTTTCCTGGGCCGGGCCTTGCAGTACGAGTTTTGGGTGATGTCACGGAAGGAAATGCTTTGGAAATCCTTCGCCAGGTTGATGAGATATTTATTCAGTCGATAAAGGATGCTGGGATTTACGATTCTATATGGCAAGCATTTGCTGTTTTTTTGCCTATAAGATCAGTTGGTGTTCAAGGAGATCAGAGAACACATTCTCATGTTGTTGCACTTAGAGCCGTCACTAGTCAAGATGGAATGACAGCGGACTGGTACAACTTCGACCACAAGTTCCTCGATGACGTGTCCAGAAAGATATGCAATAGTGTTCGTGGAGTAAACCGAGTTGTTCAAGACATAACGTCTAAACCTCCATCAACTATTGAGTGGGAATAA

Network for GWHGAAZE027566

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00117.29	GATase	13	200	3.80E-31
PF00958.23	GMP_synt_C	444	534	9.50E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01951	guaA, GMPS	Metabolic pathways	map01100
		Purine metabolism	map00230
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0006164	biological_process	purine nucleotide biosynthetic process
GO:0006177	biological_process	GMP biosynthetic process
GO:0003922	molecular_function	GMP synthase (glutamine-hydrolyzing) activity
GO:0005524	molecular_function	ATP binding
GO:0016462	molecular_function	pyrophosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.790
	SRR3591706	second leaf	3.421
	SRR3591707	mature leaf	5.265
	SRR3591708	Shoot apex	18.438
	SRR3591709	Stem	7.632
	SRR3591710	White floral bud	12.628
	SRR3591711	White flower	24.807
	SRR3591712	Green floral bud	14.835
	SRR3591713	Yellow flower	17.463
SRP173429	SRR8316895	Juvenile bud stage	17.190
	SRR8316896	Juvenile bud stage	28.103
	SRR8316897	Juvenile bud stage	9.440
	SRR8316894	Third green stage	9.471
	SRR8316900	Third green stage	26.862
	SRR8316901	Third green stage	22.948
	SRR8316898	Complete white stage	5.740
	SRR8316899	Complete white stage	23.014
	SRR8316903	Complete white stage	8.022
	SRR8316902	Silver flowering stage	8.947
	SRR8316904	Silver flowering stage	10.100
	SRR8316905	Silver flowering stage	4.583
	SRR8316906	Gold flowering stage	17.268
	SRR8316907	Gold flowering stage	17.278
	SRR8316908	Gold flowering stage	14.802
SRP132670	SRR6706286	Control	26.708
	SRR6706287	Light intensity 50%	28.055
	SRR6706288	Light intensity 20%	31.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.947
	CNS0095593	Slightly white alabastrum(diploid) 2	21.272
	CNS0095594	Slightly white alabastrum(diploid) 3	28.962
	CNS0095595	Whole white alabastrum(diploid) 2	19.341
	CNS0095596	Whole white alabastrum(diploid) 3	22.657
	CNS0095597	Whole white alabastrum(diploid) 4	18.960
	CNS0095598	Silvery flower (diploied) 1	11.189
	CNS0095599	Silvery flower (diploied) 2	11.346
	CNS0095600	Silvery flower (diploied) 3	14.632
	CNS0095601	Golden flower (diploid) 1	10.250
	CNS0095602	Golden flower (diploid) 2	9.431
	CNS0095603	Golden flower (diploid) 3	10.449
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.536
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.210
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.523
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.018
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.194
	CNS0095610	Silvery flower (tetraploid) 1	16.085
	CNS0095611	Silvery flower (tetraploid) 2	13.760
	CNS0095612	Silvery flower (tetraploid) 3	12.159
	CNS0095613	Golden flower (tetraploid) 1	7.066
	CNS0095614	Golden flower (tetraploid) 2	9.593
	CNS0095615	Golden flower (tetraploid) 3	6.400
CRA001975	CRR073297	Stem 1	23.573
	CRR073298	Stem 2	21.236
	CRR073299	Stem 3	20.941
	CRR073300	Leaf 1	15.931
	CRR073301	Leaf 2	17.689
	CRR073302	Leaf 3	19.771
	CRR073303	Juvenile bud 1	16.683
	CRR073304	Juvenile bud 2	10.966
	CRR073305	Juvenile bud 3	17.680
	CRR073306	Third green 1	4.915
	CRR073307	Third green 2	4.137
	CRR073308	Third green 3	5.235
	CRR073309	Second white 1	10.476
	CRR073310	Second white 2	7.926
	CRR073311	Second white 3	7.289
	CRR073312	Silver flowering 1	8.191
	CRR073313	Silver flowering 2	11.134
	CRR073314	Silver flowering 3	6.280
	CRR073315	Gold flowering 1	15.630
	CRR073316	Gold flowering 2	18.556
	CRR073317	Gold flowering 3	13.648
	CRR073318	Tawny withering 1	12.215
	CRR073319	Tawny withering 2	12.735
	CRR073320	Tawny withering 3	16.975