Gene detail

Detail information of GWHGAAZE027576

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP09740.1	unnamed protein product [Coffea canephora]
COG	YP_001411938.1	glutamate--cysteine ligase
Swissprot	tr\|Q1W2L8\|GSH1_TOBAC	Glutamate--cysteine ligase, chloroplastic (Precursor)
trEMBL	tr\|A0A068UMK1\|A0A068UMK1_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_41 {ECO:0000313\|EMBL:CDP09740.1}
TAIR10	AT4G23100.3	glutamate-cysteine ligase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	22861763	22871159	+
GWHAAZE00000008	mRNA	22861763	22871159	+
GWHAAZE00000008	exon	22861763	22862097	+
GWHAAZE00000008	exon	22862184	22862200	+
GWHAAZE00000008	exon	22862532	22862734	+
GWHAAZE00000008	exon	22863009	22863116	+
GWHAAZE00000008	exon	22863676	22863768	+
GWHAAZE00000008	exon	22864192	22864275	+
GWHAAZE00000008	exon	22864439	22864507	+
GWHAAZE00000008	exon	22864761	22864831	+
GWHAAZE00000008	exon	22864919	22864987	+
GWHAAZE00000008	exon	22865885	22865978	+
GWHAAZE00000008	exon	22866088	22866177	+
GWHAAZE00000008	exon	22866676	22866756	+
GWHAAZE00000008	exon	22868268	22868360	+
GWHAAZE00000008	exon	22869374	22869454	+
GWHAAZE00000008	exon	22869541	22869610	+
GWHAAZE00000008	exon	22870485	22870618	+
GWHAAZE00000008	exon	22870946	22871159	+
GWHAAZE00000008	CDS	22861763	22862097	+
GWHAAZE00000008	CDS	22862184	22862200	+
GWHAAZE00000008	CDS	22862532	22862734	+
GWHAAZE00000008	CDS	22863009	22863116	+
GWHAAZE00000008	CDS	22863676	22863768	+
GWHAAZE00000008	CDS	22864192	22864275	+
GWHAAZE00000008	CDS	22864439	22864507	+
GWHAAZE00000008	CDS	22864761	22864831	+
GWHAAZE00000008	CDS	22864919	22864987	+
GWHAAZE00000008	CDS	22865885	22865978	+
GWHAAZE00000008	CDS	22866088	22866177	+
GWHAAZE00000008	CDS	22866676	22866756	+
GWHAAZE00000008	CDS	22868268	22868360	+
GWHAAZE00000008	CDS	22869374	22869454	+
GWHAAZE00000008	CDS	22869541	22869610	+
GWHAAZE00000008	CDS	22870485	22870573	+
GWHAAZE00000008	three_prime_UTR	22870574	22870618	+
GWHAAZE00000008	three_prime_UTR	22870946	22871159	+

Transcript Sequence
>GWHTAAZE027610 ATGGCACTAATGTCACAGGCCAGTAATTTGTATGGTATTCGTGCCAAAAGTATACAATCTAAAGGTTTAAACAGTTTGTTTCAAAGTGTCACAAACAATGTGGAGGGTTCCAAATTGAAGGGAAATTGCAGTAGTTTGCCTTCATTGTTGCGGGATTCATCGAAGAGAGTGCAGAATTTGCGATTAGGATACAAACGAGGGGATCGAGTAATTGTTGCTGCAAGTCCTCCCACAGAGGATGCTGTGGTTGCCACTGAGCCTTTGACGAAAGAGGATCTTGTAGCATACCTTGCTTCCGGGTGCAAGTCTAAAGAAAAATGGAGGTTCAACTTCTTTGATACTAGGGGCCTGGGTAATTCTGTTTTATACAACCTCGGAAATTGTTGGCTTTATTTGCTTTGCAGAATAGGTACTGAACATGAAAAATTTGGTTTTGAGACTGGAACCTTGCACCCCATGAAGTATGAACAAATTGCTGAGTTGCTTAATAGTATTTCTGAGAGATTTGATTGGGAGAAAGTAATGGAAGGCGATAACATTATCGGACTCAAGCAGGGGATGCAAAGCATATCACTGGAACCTGGAGGTCAATTTGAGCTTAGTGGTGCACCTCTTGAAACTCTCCATCAAACTTGTGCTGAGGTTAATTCGCACCTTTATCAGGTTAAAGCTGTTGCAGAGGAGATGGGAATCGGATTTTTAGGAATTGGTTTCCAGCCCAAATGGAAACGGAACAAGATACCTATAATGCCCAAGGGAAGATATGAGATTATGAAGAATTATATGCCTAAAGTTGGGTCTCTTGGACTCGATATGATGTTCCGGACATGTACCGTTCAGGTTAATCTGGATTTCAGTTCTGAAGCTGACATGATAAGGAAATTCCGTGTTGGTCTCGCTTTACAGCCTATTGCAACAGCACTATTCGCCAATTCACCTTTTACCGAAGGAAAGCCAAATGGTTATCTTAGCATGAGAAGCCAAATTTGGACAGACACGGATAATAATCGCTCTGGCATGATTCCCTTTGTTTTTGATGATTCCTTTGGGTTTGAGCAGTATGTTGACTATGCTCTTGATGTCCCTATGTATTTCGTGTATCGCAAAAAGAAGTATATTGATTGTGCTGGAATGTCCTTCAGGGACTTCATGGCTGGAAAACTTGCTCCTATTCCGGGAGAATATCCAACCCTCAATGATTGGGAGAATCATCTTACGACGATATTTCCAGAGGTGAGGCTTAAAAGATATTTGGAGATGAGGGGAGCTGATGGAGGGCCTTGGAGGAGGTTATGTGCATTGCCTGCTTTCTGGGTGGGTCTATTATATGACGAGGTTTCTCTACAAAATGTTCTGGATTTGACTGCTGATTGGACCATGGAAGAAAGGCAGATGTTGAGAAATAAGGTACCAAAGAGTGGTTTGAATACACCATTTCGAGATGGGTTGCTGAGACATGTTGCTGAAGATGTTATGAAGTTCGCAAAGGATGGGTTGGAGAGAAGAGGCTTTAAAGAAGCAGGGTTTTTGAATGAAGTAGCTGAGGTGGTTAGAACTGGTGTAACACCAGCTGAGAAGCTTCTGGACTTGTACTATGGGAAGTGGGGGAAAAGCGTGGATCCCGTTTTTCAGGAACTGCTCTACTAAGCTGATCCGCATATCTCTTGATACCTCTGTTTGTACCCTCAACTTGCATAAGTTGCAATTTACCCTTAGGTGCGCCGGATTAAGGGTGGTCCATGGAGGATGAATCTTTTTTTCCTACTTGGGTGAGTAGGATCATCACTTGTTGAAGGTTCACAATAGCTTCACATGGTTTTTAGCATCGGTTCTATACGCGCAAAATAATGTGTAATTGGTTCACCCAATATATAACATATTTGTATTCCAAGAAATAAGCTGTAGA

Network for GWHGAAZE027576

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04107.14	GCS2	159	458	1.70E-96

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01919	gshA	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0042398	biological_process	cellular modified amino acid biosynthetic process
GO:0006750	biological_process	glutathione biosynthetic process
GO:0004357	molecular_function	glutamate-cysteine ligase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.891
	SRR3591706	second leaf	13.646
	SRR3591707	mature leaf	6.108
	SRR3591708	Shoot apex	19.793
	SRR3591709	Stem	23.236
	SRR3591710	White floral bud	9.926
	SRR3591711	White flower	7.747
	SRR3591712	Green floral bud	13.710
	SRR3591713	Yellow flower	2.308
SRP173429	SRR8316895	Juvenile bud stage	7.895
	SRR8316896	Juvenile bud stage	12.567
	SRR8316897	Juvenile bud stage	5.717
	SRR8316894	Third green stage	5.883
	SRR8316900	Third green stage	24.257
	SRR8316901	Third green stage	21.779
	SRR8316898	Complete white stage	6.605
	SRR8316899	Complete white stage	19.110
	SRR8316903	Complete white stage	10.385
	SRR8316902	Silver flowering stage	6.552
	SRR8316904	Silver flowering stage	9.474
	SRR8316905	Silver flowering stage	5.932
	SRR8316906	Gold flowering stage	8.065
	SRR8316907	Gold flowering stage	8.661
	SRR8316908	Gold flowering stage	10.546
SRP132670	SRR6706286	Control	9.866
	SRR6706287	Light intensity 50%	9.886
	SRR6706288	Light intensity 20%	11.439
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.787
	CNS0095593	Slightly white alabastrum(diploid) 2	14.552
	CNS0095594	Slightly white alabastrum(diploid) 3	9.408
	CNS0095595	Whole white alabastrum(diploid) 2	10.673
	CNS0095596	Whole white alabastrum(diploid) 3	10.444
	CNS0095597	Whole white alabastrum(diploid) 4	9.724
	CNS0095598	Silvery flower (diploied) 1	4.655
	CNS0095599	Silvery flower (diploied) 2	4.746
	CNS0095600	Silvery flower (diploied) 3	7.570
	CNS0095601	Golden flower (diploid) 1	5.111
	CNS0095602	Golden flower (diploid) 2	5.696
	CNS0095603	Golden flower (diploid) 3	5.260
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.064
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.644
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.676
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.847
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.776
	CNS0095610	Silvery flower (tetraploid) 1	13.396
	CNS0095611	Silvery flower (tetraploid) 2	10.698
	CNS0095612	Silvery flower (tetraploid) 3	12.541
	CNS0095613	Golden flower (tetraploid) 1	8.791
	CNS0095614	Golden flower (tetraploid) 2	18.337
	CNS0095615	Golden flower (tetraploid) 3	2.742
CRA001975	CRR073297	Stem 1	10.647
	CRR073298	Stem 2	11.367
	CRR073299	Stem 3	11.809
	CRR073300	Leaf 1	12.108
	CRR073301	Leaf 2	13.371
	CRR073302	Leaf 3	16.598
	CRR073303	Juvenile bud 1	16.387
	CRR073304	Juvenile bud 2	14.128
	CRR073305	Juvenile bud 3	15.934
	CRR073306	Third green 1	7.835
	CRR073307	Third green 2	9.032
	CRR073308	Third green 3	11.015
	CRR073309	Second white 1	1.970
	CRR073310	Second white 2	2.322
	CRR073311	Second white 3	0.709
	CRR073312	Silver flowering 1	0.990
	CRR073313	Silver flowering 2	0.712
	CRR073314	Silver flowering 3	1.487
	CRR073315	Gold flowering 1	9.308
	CRR073316	Gold flowering 2	13.710
	CRR073317	Gold flowering 3	8.099
	CRR073318	Tawny withering 1	3.387
	CRR073319	Tawny withering 2	4.197
	CRR073320	Tawny withering 3	4.144