Detail information of GWHGAAZE027583


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271860.10PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 [Vitis vinifera]
COGYP_001192956.15E-22two component regulator
Swissprottr|C0LGH8|Y1634_ARATH0Probable LRR receptor-like serine/threonine-protein kinase At1g63430 (Precursor)
trEMBLtr|D7TW14|D7TW14_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI34689.3}
TAIR10AT1G63430.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2294485722951742-
GWHAAZE00000008mRNA2294485722951742-
GWHAAZE00000008exon2294485722945099-
GWHAAZE00000008exon2294670922946924-
GWHAAZE00000008exon2294753022947687-
GWHAAZE00000008exon2294789722948029-
GWHAAZE00000008exon2294811322948318-
GWHAAZE00000008exon2294908322949337-
GWHAAZE00000008exon2294967322949746-
GWHAAZE00000008exon2294982422949940-
GWHAAZE00000008exon2295048222950631-
GWHAAZE00000008exon2295074722950890-
GWHAAZE00000008exon2295099522951066-
GWHAAZE00000008exon2295125222951390-
GWHAAZE00000008exon2295165822951742-
GWHAAZE00000008CDS2295165822951742-
GWHAAZE00000008CDS2295125222951390-
GWHAAZE00000008CDS2295099522951066-
GWHAAZE00000008CDS2295074722950890-
GWHAAZE00000008CDS2295048222950631-
GWHAAZE00000008CDS2294982422949940-
GWHAAZE00000008CDS2294967322949746-
GWHAAZE00000008CDS2294908322949337-
GWHAAZE00000008CDS2294811322948318-
GWHAAZE00000008CDS2294789722948029-
GWHAAZE00000008CDS2294753022947687-
GWHAAZE00000008CDS2294670922946924-
GWHAAZE00000008CDS2294485722945099-
Transcript Sequence

Network for GWHGAAZE027583

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_227668.90E-09
PF00560.34LRR_11201410.93
PF07714.18PK_Tyr_Ser-Thr3705762.00E-17
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-VI-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.628
SRR3591706second leaf10.351
SRR3591707mature leaf1.983
SRR3591708Shoot apex9.450
SRR3591709Stem20.488
SRR3591710White floral bud3.942
SRR3591711White flower2.379
SRR3591712Green floral bud5.722
SRR3591713Yellow flower0.964
SRP173429 SRR8316895Juvenile bud stage 4.586
SRR8316896Juvenile bud stage 4.688
SRR8316897Juvenile bud stage 0.664
SRR8316894Third green stage 2.062
SRR8316900Third green stage 3.951
SRR8316901Third green stage 4.653
SRR8316898Complete white stage 0.443
SRR8316899Complete white stage 5.474
SRR8316903Complete white stage 0.960
SRR8316902Silver flowering stage0.396
SRR8316904Silver flowering stage0.564
SRR8316905Silver flowering stage0.198
SRR8316906Gold flowering stage 0.932
SRR8316907Gold flowering stage 1.313
SRR8316908Gold flowering stage 0.275
SRP132670SRR6706286Control2.409
SRR6706287Light intensity 50%2.027
SRR6706288Light intensity 20%2.194
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.622
CNS0095593Slightly white alabastrum(diploid) 21.840
CNS0095594Slightly white alabastrum(diploid) 31.361
CNS0095595Whole white alabastrum(diploid) 22.110
CNS0095596Whole white alabastrum(diploid) 32.145
CNS0095597Whole white alabastrum(diploid) 41.370
CNS0095598Silvery flower (diploied) 13.047
CNS0095599Silvery flower (diploied) 21.489
CNS0095600Silvery flower (diploied) 31.756
CNS0095601Golden flower (diploid) 12.211
CNS0095602Golden flower (diploid) 22.567
CNS0095603Golden flower (diploid) 32.357
CNS0095604Slightly white alabastrum(tetraploid) 12.495
CNS0095605Slightly white alabastrum(tetraploid) 21.380
CNS0095606Slightly white alabastrum(tetraploid) 35.851
CNS0095607Whole white alabastrum(tetraploid) 11.368
CNS0095608Whole white alabastrum(tetraploid) 20.672
CNS0095609Whole white alabastrum(tetraploid) 32.922
CNS0095610Silvery flower (tetraploid) 10.626
CNS0095611Silvery flower (tetraploid) 21.342
CNS0095612Silvery flower (tetraploid) 30.544
CNS0095613Golden flower (tetraploid) 10.205
CNS0095614Golden flower (tetraploid) 20.322
CNS0095615Golden flower (tetraploid) 30.257
CRA001975CRR073297Stem 15.928
CRR073298Stem 24.494
CRR073299Stem 32.422
CRR073300Leaf 13.149
CRR073301Leaf 23.087
CRR073302Leaf 32.450
CRR073303Juvenile bud 12.120
CRR073304Juvenile bud 20.936
CRR073305Juvenile bud 33.884
CRR073306Third green 10.171
CRR073307Third green 20.253
CRR073308Third green 30.429
CRR073309Second white 10.000
CRR073310Second white 20.130
CRR073311Second white 30.314
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.090
CRR073315Gold flowering 12.253
CRR073316Gold flowering 20.955
CRR073317Gold flowering 30.600
CRR073318Tawny withering 19.214
CRR073319Tawny withering 24.686
CRR073320Tawny withering 38.533