Gene detail

Detail information of GWHGAAZE027586

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP09740.1	unnamed protein product [Coffea canephora]
COG	YP_001411938.1	glutamate--cysteine ligase
Swissprot	tr\|Q1W2L8\|GSH1_TOBAC	Glutamate--cysteine ligase, chloroplastic (Precursor)
trEMBL	tr\|A0A068UMK1\|A0A068UMK1_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_41 {ECO:0000313\|EMBL:CDP09740.1}
TAIR10	AT4G23100.3	glutamate-cysteine ligase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	23184194	23193604	+
GWHAAZE00000008	mRNA	23184194	23193604	+
GWHAAZE00000008	exon	23184194	23184528	+
GWHAAZE00000008	exon	23184624	23184631	+
GWHAAZE00000008	exon	23184963	23185165	+
GWHAAZE00000008	exon	23185440	23185547	+
GWHAAZE00000008	exon	23186124	23186216	+
GWHAAZE00000008	exon	23186639	23186722	+
GWHAAZE00000008	exon	23186884	23186952	+
GWHAAZE00000008	exon	23187208	23187278	+
GWHAAZE00000008	exon	23187368	23187436	+
GWHAAZE00000008	exon	23188338	23188431	+
GWHAAZE00000008	exon	23188541	23188630	+
GWHAAZE00000008	exon	23189129	23189209	+
GWHAAZE00000008	exon	23190713	23190805	+
GWHAAZE00000008	exon	23191818	23191898	+
GWHAAZE00000008	exon	23191985	23192054	+
GWHAAZE00000008	exon	23192930	23193063	+
GWHAAZE00000008	exon	23193391	23193604	+
GWHAAZE00000008	CDS	23184194	23184528	+
GWHAAZE00000008	CDS	23184624	23184631	+
GWHAAZE00000008	CDS	23184963	23185165	+
GWHAAZE00000008	CDS	23185440	23185547	+
GWHAAZE00000008	CDS	23186124	23186216	+
GWHAAZE00000008	CDS	23186639	23186722	+
GWHAAZE00000008	CDS	23186884	23186952	+
GWHAAZE00000008	CDS	23187208	23187278	+
GWHAAZE00000008	CDS	23187368	23187436	+
GWHAAZE00000008	CDS	23188338	23188431	+
GWHAAZE00000008	CDS	23188541	23188630	+
GWHAAZE00000008	CDS	23189129	23189209	+
GWHAAZE00000008	CDS	23190713	23190805	+
GWHAAZE00000008	CDS	23191818	23191898	+
GWHAAZE00000008	CDS	23191985	23192054	+
GWHAAZE00000008	CDS	23192930	23193018	+
GWHAAZE00000008	three_prime_UTR	23193019	23193063	+
GWHAAZE00000008	three_prime_UTR	23193391	23193604	+

Transcript Sequence
>GWHTAAZE027620 ATGGCACTAATGTCGCAGGCCAGTAATTTGTATGGTATTCGTGCCAAAAGTATACAATCTAAAGGTTTAAACAGTTTGTTTCAAAGTGTCACAAACAATGTGGAGGGTTCCAAATTGAAGGGAAATTGCAGTAGTTTGCCTTCATTGTTGCGGGATTCATCGAAGAGAGTGCATAATTTGCGATTAGGATACAAACGAGGGGATCGAGTAATTGTTGCTGCAAGTCCTCCCACAGAGGATGCTGTGGTTGCTACTGAGCCATTGACGAAAGAGGATCTTGTAGCATACCTTGCTTCCGGGTGCAAGTCTAAAGAAAAATGGAGGTTCAACTTCTTGGGGCTGGGTAATTCTGTTTTATACAACCTCGGAAATTGTTGGCTTTATTTGCTTTGCAGAATAGGTACTGAACATGAAAAATTTGGTTTTGAGACTGGAACCTTGCACCCCATGAAGTATGAACAAATTGCTGAGTTGCTTAATAGTATTTCTGAGAGATTTGATTGGGAGAAAGTAATGGAAGGCGATAACATTATCGGACTCAAGCAGGGGATGCAAAGCATATCACTGGAACCTGGAGGTCAATTTGAGCTTAGTGGTGCACCTCTTGAAACTCTCCATCAAACTTGTGCTGAGGTTAATTCGCACCTTTATCAGGTTAAAGCTGTTGCAGAGGAGATGGGAATCGGATTTTTAGGAATTGGTTTCCAGCCCAAATGGAAACGGAACGAGATACCTATAATGCCCAAGGGAAGATATGAGATTATGAAGAATTATATGCCTAAAGTTGGGTCTCTTGGACTCGATATGATGTTCCGGACATGTACCGTTCAGGTTAATCTGGATTTCAGTTCTGAAGCTGACATGATAAGGAAATTCCGTGTTGGTCTCGCTTTACAGCCTATTGCAACAGCACTATTCGCCAATTCACCTTTTACCGAAGGAAAGCCAAATGGTTATCTTAGCATGAGAAGCCAAATTTGGACAGACACGGATAATAATCGCTCTGGCATGATTCCCTTTGTTTTTGATGATTCCTTTGGGTTTGAGCAGTATGTTGACTATGCTCTTGATGTCCCTATGTATTTCGTGTATCGCAAAAAGAAGTATATTGATTGTGCTGGAATGTCCTTCAGGGACTTCATGGCTGGAAAACTTGCACCTATTCCGGGAGAATATCCAACCCTCAATGATTGGGAGAATCATCTTACGACGATATTTCCAGAGGTGAGGCTTAAAAGATATTTGGAGATGAGGGGAGCTGATGGAGGGCCTTGGAGGAGGTTATGTGCATTGCCTGCTTTCTGGGTGGGTCTATTATATGACGAGGTTTCTCTACAAAATGTTCTGGATTTGACTGCTGATTGGACCATGGAAGAAAGGCAGATGTTGAGAAATAAGGTACCAAAGAGTGGTTTGAATACACCATTTCGAGATGGGTTGCTGAGACATGTTGCTGAAGATGTTATGAAGTTCGCAAAGGATGGGTTGGAGAGAAGAGGCTTTAAAGAAGCAGGGTTTTTGAATGAAGTAGCTGAGGTGGTTAGAACTGGTGTAACACCAGCTGAGAAGCTTCTGGACTTGTACTATGGGAAGTGGGGGAAAAGCGTGGATCCCGTTTTTCAGGAACTGCTCTACTAAGCTGATCCGCATATCTCTTGATACCTCTGTTTGTACCCTCAACTTGCATAAGTTGCAATTTACCCTTAGGTGCGCCGGATTAAGGGTGGTCCATGGAGGATGAATCTTTTTTTCCTACTTGGGTGAGTAGGATCATCACTTGTTGAAGATTCACAATAGCTTCACATGGTTTTTAGCATCGGTTCTATACGCGCAAAATAATGTGTAATTGGTTCACCCAATATATAACATATTTGTATTCCAAGAAATAAGCTGTAGA

Network for GWHGAAZE027586

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04107.14	GCS2	156	455	9.90E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01919	gshA	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0042398	biological_process	cellular modified amino acid biosynthetic process
GO:0006750	biological_process	glutathione biosynthetic process
GO:0004357	molecular_function	glutamate-cysteine ligase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.397
	SRR3591706	second leaf	8.450
	SRR3591707	mature leaf	3.013
	SRR3591708	Shoot apex	13.490
	SRR3591709	Stem	11.535
	SRR3591710	White floral bud	12.183
	SRR3591711	White flower	7.876
	SRR3591712	Green floral bud	15.541
	SRR3591713	Yellow flower	3.060
SRP173429	SRR8316895	Juvenile bud stage	6.068
	SRR8316896	Juvenile bud stage	10.354
	SRR8316897	Juvenile bud stage	4.952
	SRR8316894	Third green stage	5.267
	SRR8316900	Third green stage	16.431
	SRR8316901	Third green stage	20.621
	SRR8316898	Complete white stage	6.401
	SRR8316899	Complete white stage	21.660
	SRR8316903	Complete white stage	9.604
	SRR8316902	Silver flowering stage	6.558
	SRR8316904	Silver flowering stage	9.800
	SRR8316905	Silver flowering stage	5.746
	SRR8316906	Gold flowering stage	5.938
	SRR8316907	Gold flowering stage	8.855
	SRR8316908	Gold flowering stage	13.839
SRP132670	SRR6706286	Control	10.617
	SRR6706287	Light intensity 50%	10.044
	SRR6706288	Light intensity 20%	9.787
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.563
	CNS0095593	Slightly white alabastrum(diploid) 2	11.800
	CNS0095594	Slightly white alabastrum(diploid) 3	7.901
	CNS0095595	Whole white alabastrum(diploid) 2	8.710
	CNS0095596	Whole white alabastrum(diploid) 3	10.547
	CNS0095597	Whole white alabastrum(diploid) 4	9.027
	CNS0095598	Silvery flower (diploied) 1	5.424
	CNS0095599	Silvery flower (diploied) 2	3.354
	CNS0095600	Silvery flower (diploied) 3	7.807
	CNS0095601	Golden flower (diploid) 1	4.433
	CNS0095602	Golden flower (diploid) 2	6.459
	CNS0095603	Golden flower (diploid) 3	5.471
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.502
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.249
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.272
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.836
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.514
	CNS0095610	Silvery flower (tetraploid) 1	18.931
	CNS0095611	Silvery flower (tetraploid) 2	12.072
	CNS0095612	Silvery flower (tetraploid) 3	15.891
	CNS0095613	Golden flower (tetraploid) 1	8.978
	CNS0095614	Golden flower (tetraploid) 2	21.388
	CNS0095615	Golden flower (tetraploid) 3	4.749
CRA001975	CRR073297	Stem 1	11.741
	CRR073298	Stem 2	10.587
	CRR073299	Stem 3	11.641
	CRR073300	Leaf 1	17.566
	CRR073301	Leaf 2	12.534
	CRR073302	Leaf 3	14.997
	CRR073303	Juvenile bud 1	13.323
	CRR073304	Juvenile bud 2	13.995
	CRR073305	Juvenile bud 3	14.740
	CRR073306	Third green 1	7.706
	CRR073307	Third green 2	7.921
	CRR073308	Third green 3	8.563
	CRR073309	Second white 1	2.143
	CRR073310	Second white 2	2.542
	CRR073311	Second white 3	0.838
	CRR073312	Silver flowering 1	0.731
	CRR073313	Silver flowering 2	2.102
	CRR073314	Silver flowering 3	2.573
	CRR073315	Gold flowering 1	9.994
	CRR073316	Gold flowering 2	12.245
	CRR073317	Gold flowering 3	8.437
	CRR073318	Tawny withering 1	2.654
	CRR073319	Tawny withering 2	5.517
	CRR073320	Tawny withering 3	3.425