Detail information of GWHGAAZE027593


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271860.10PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 [Vitis vinifera]
COGYP_001192956.12E-21two component regulator
Swissprottr|C0LGH8|Y1634_ARATH0Probable LRR receptor-like serine/threonine-protein kinase At1g63430 (Precursor)
trEMBLtr|D7TW14|D7TW14_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI34689.3}
TAIR10AT1G63430.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2325428723261192-
GWHAAZE00000008mRNA2325428723261192-
GWHAAZE00000008exon2326110823261192-
GWHAAZE00000008exon2326069823260836-
GWHAAZE00000008exon2326042623260497-
GWHAAZE00000008exon2326017823260321-
GWHAAZE00000008exon2325991323260062-
GWHAAZE00000008exon2325925623259372-
GWHAAZE00000008exon2325910823259178-
GWHAAZE00000008exon2325863423258772-
GWHAAZE00000008exon2325754923257753-
GWHAAZE00000008exon2325733323257465-
GWHAAZE00000008exon2325696623257123-
GWHAAZE00000008exon2325614523256360-
GWHAAZE00000008exon2325428723254532-
GWHAAZE00000008CDS2326110823261192-
GWHAAZE00000008CDS2326069823260836-
GWHAAZE00000008CDS2326042623260497-
GWHAAZE00000008CDS2326017823260321-
GWHAAZE00000008CDS2325991323260062-
GWHAAZE00000008CDS2325925623259372-
GWHAAZE00000008CDS2325910823259178-
GWHAAZE00000008CDS2325863423258772-
GWHAAZE00000008CDS2325754923257753-
GWHAAZE00000008CDS2325733323257465-
GWHAAZE00000008CDS2325696623257123-
GWHAAZE00000008CDS2325614523256360-
GWHAAZE00000008CDS2325428723254532-
Transcript Sequence

Network for GWHGAAZE027593

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_227668.30E-09
PF00560.34LRR_11201410.87
PF07714.18PK_Tyr_Ser-Thr3305371.00E-16
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-VI-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.925
SRR3591706second leaf3.186
SRR3591707mature leaf0.763
SRR3591708Shoot apex4.128
SRR3591709Stem9.203
SRR3591710White floral bud1.522
SRR3591711White flower1.000
SRR3591712Green floral bud1.928
SRR3591713Yellow flower0.284
SRP173429 SRR8316895Juvenile bud stage 3.982
SRR8316896Juvenile bud stage 3.072
SRR8316897Juvenile bud stage 1.192
SRR8316894Third green stage 1.888
SRR8316900Third green stage 3.439
SRR8316901Third green stage 3.612
SRR8316898Complete white stage 0.582
SRR8316899Complete white stage 4.934
SRR8316903Complete white stage 0.685
SRR8316902Silver flowering stage0.302
SRR8316904Silver flowering stage0.621
SRR8316905Silver flowering stage0.224
SRR8316906Gold flowering stage 0.324
SRR8316907Gold flowering stage 0.341
SRR8316908Gold flowering stage 0.864
SRP132670SRR6706286Control1.250
SRR6706287Light intensity 50%1.911
SRR6706288Light intensity 20%2.018
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.747
CNS0095593Slightly white alabastrum(diploid) 22.184
CNS0095594Slightly white alabastrum(diploid) 32.646
CNS0095595Whole white alabastrum(diploid) 22.036
CNS0095596Whole white alabastrum(diploid) 31.784
CNS0095597Whole white alabastrum(diploid) 42.007
CNS0095598Silvery flower (diploied) 12.538
CNS0095599Silvery flower (diploied) 21.863
CNS0095600Silvery flower (diploied) 31.498
CNS0095601Golden flower (diploid) 11.934
CNS0095602Golden flower (diploid) 21.670
CNS0095603Golden flower (diploid) 31.612
CNS0095604Slightly white alabastrum(tetraploid) 12.621
CNS0095605Slightly white alabastrum(tetraploid) 21.979
CNS0095606Slightly white alabastrum(tetraploid) 33.975
CNS0095607Whole white alabastrum(tetraploid) 12.035
CNS0095608Whole white alabastrum(tetraploid) 21.945
CNS0095609Whole white alabastrum(tetraploid) 32.198
CNS0095610Silvery flower (tetraploid) 11.031
CNS0095611Silvery flower (tetraploid) 21.573
CNS0095612Silvery flower (tetraploid) 30.629
CNS0095613Golden flower (tetraploid) 10.314
CNS0095614Golden flower (tetraploid) 20.766
CNS0095615Golden flower (tetraploid) 30.168
CRA001975CRR073297Stem 15.425
CRR073298Stem 23.649
CRR073299Stem 32.701
CRR073300Leaf 13.798
CRR073301Leaf 22.875
CRR073302Leaf 32.606
CRR073303Juvenile bud 12.469
CRR073304Juvenile bud 22.306
CRR073305Juvenile bud 32.439
CRR073306Third green 10.145
CRR073307Third green 20.238
CRR073308Third green 30.376
CRR073309Second white 10.088
CRR073310Second white 20.060
CRR073311Second white 30.000
CRR073312Silver flowering 10.042
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.042
CRR073315Gold flowering 11.331
CRR073316Gold flowering 20.936
CRR073317Gold flowering 30.307
CRR073318Tawny withering 19.390
CRR073319Tawny withering 25.678
CRR073320Tawny withering 38.265