Detail information of GWHGAAZE027596


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271357.10PREDICTED: DEAD-box ATP-dependent RNA helicase 8 [Vitis vinifera]
COGYP_003640197.11E-87DEAD/DEAH box helicase
Swissprottr|Q8RXK6|RH8_ARATH0DEAD-box ATP-dependent RNA helicase 8
trEMBLtr|F6HUE2|F6HUE2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58365.1}
TAIR10AT4G00660.20RNAhelicase-like 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2334163523348340-
GWHAAZE00000008mRNA2334163523348340-
GWHAAZE00000008exon2334809323348340-
GWHAAZE00000008exon2334659523346655-
GWHAAZE00000008exon2334551823345752-
GWHAAZE00000008exon2334461523344853-
GWHAAZE00000008exon2334374623343997-
GWHAAZE00000008exon2334330923343489-
GWHAAZE00000008exon2334258823342676-
GWHAAZE00000008exon2334242323342496-
GWHAAZE00000008exon2334163523341986-
GWHAAZE00000008CDS2334809323348340-
GWHAAZE00000008CDS2334659523346655-
GWHAAZE00000008CDS2334551823345752-
GWHAAZE00000008CDS2334461523344853-
GWHAAZE00000008CDS2334374623343997-
GWHAAZE00000008CDS2334330923343489-
GWHAAZE00000008CDS2334258823342676-
GWHAAZE00000008CDS2334242323342496-
GWHAAZE00000008CDS2334190823341986-
GWHAAZE00000008three_prime_UTR2334163523341907-
Transcript Sequence

Network for GWHGAAZE027596

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD1363004.30E-43
PF00271.32Helicase_C3374435.60E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12614DDX6, RCK, DHH1 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.571
SRR3591706second leaf21.652
SRR3591707mature leaf23.505
SRR3591708Shoot apex38.474
SRR3591709Stem22.576
SRR3591710White floral bud16.990
SRR3591711White flower23.616
SRR3591712Green floral bud19.534
SRR3591713Yellow flower19.366
SRP173429 SRR8316895Juvenile bud stage 16.801
SRR8316896Juvenile bud stage 17.013
SRR8316897Juvenile bud stage 10.034
SRR8316894Third green stage 7.680
SRR8316900Third green stage 18.135
SRR8316901Third green stage 13.737
SRR8316898Complete white stage 5.395
SRR8316899Complete white stage 19.844
SRR8316903Complete white stage 8.585
SRR8316902Silver flowering stage5.545
SRR8316904Silver flowering stage10.193
SRR8316905Silver flowering stage4.286
SRR8316906Gold flowering stage 11.702
SRR8316907Gold flowering stage 11.707
SRR8316908Gold flowering stage 12.154
SRP132670SRR6706286Control4.146
SRR6706287Light intensity 50%5.097
SRR6706288Light intensity 20%5.688
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.759
CNS0095593Slightly white alabastrum(diploid) 216.945
CNS0095594Slightly white alabastrum(diploid) 316.615
CNS0095595Whole white alabastrum(diploid) 216.133
CNS0095596Whole white alabastrum(diploid) 312.957
CNS0095597Whole white alabastrum(diploid) 412.714
CNS0095598Silvery flower (diploied) 124.350
CNS0095599Silvery flower (diploied) 220.920
CNS0095600Silvery flower (diploied) 320.671
CNS0095601Golden flower (diploid) 121.646
CNS0095602Golden flower (diploid) 224.579
CNS0095603Golden flower (diploid) 323.974
CNS0095604Slightly white alabastrum(tetraploid) 114.874
CNS0095605Slightly white alabastrum(tetraploid) 214.474
CNS0095606Slightly white alabastrum(tetraploid) 327.413
CNS0095607Whole white alabastrum(tetraploid) 111.320
CNS0095608Whole white alabastrum(tetraploid) 29.054
CNS0095609Whole white alabastrum(tetraploid) 315.269
CNS0095610Silvery flower (tetraploid) 116.768
CNS0095611Silvery flower (tetraploid) 221.623
CNS0095612Silvery flower (tetraploid) 315.027
CNS0095613Golden flower (tetraploid) 111.086
CNS0095614Golden flower (tetraploid) 213.258
CNS0095615Golden flower (tetraploid) 312.757
CRA001975CRR073297Stem 19.979
CRR073298Stem 27.028
CRR073299Stem 37.479
CRR073300Leaf 15.957
CRR073301Leaf 25.377
CRR073302Leaf 34.028
CRR073303Juvenile bud 15.433
CRR073304Juvenile bud 23.480
CRR073305Juvenile bud 34.425
CRR073306Third green 11.121
CRR073307Third green 21.591
CRR073308Third green 32.187
CRR073309Second white 13.020
CRR073310Second white 23.368
CRR073311Second white 32.432
CRR073312Silver flowering 12.308
CRR073313Silver flowering 21.273
CRR073314Silver flowering 31.147
CRR073315Gold flowering 18.329
CRR073316Gold flowering 212.183
CRR073317Gold flowering 34.676
CRR073318Tawny withering 17.338
CRR073319Tawny withering 28.261
CRR073320Tawny withering 37.506