Gene detail

Detail information of GWHGAAZE027625

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010662728.1	0	PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X2 [Vitis vinifera]
COG	YP_005842521.1	1E-21	beta-lactamase
Swissprot	tr\|Q9LKF9\|CPSF2_ARATH	0	Cleavage and polyadenylation specificity factor subunit 2
trEMBL	tr\|E0CV08\|E0CV08_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22708.3}
TAIR10	AT5G23880.1	0	cleavage and polyadenylation specificity factor 100

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	23905618	23917132	+
GWHAAZE00000008	mRNA	23905618	23917132	+
GWHAAZE00000008	exon	23905618	23905685	+
GWHAAZE00000008	exon	23906189	23906357	+
GWHAAZE00000008	exon	23906573	23906669	+
GWHAAZE00000008	exon	23907198	23907324	+
GWHAAZE00000008	exon	23907420	23907535	+
GWHAAZE00000008	exon	23907716	23907810	+
GWHAAZE00000008	exon	23907890	23908041	+
GWHAAZE00000008	exon	23908228	23908285	+
GWHAAZE00000008	exon	23908373	23908480	+
GWHAAZE00000008	exon	23908785	23909037	+
GWHAAZE00000008	exon	23909347	23909528	+
GWHAAZE00000008	exon	23909853	23909945	+
GWHAAZE00000008	exon	23910785	23910883	+
GWHAAZE00000008	exon	23910964	23911095	+
GWHAAZE00000008	exon	23911175	23911219	+
GWHAAZE00000008	exon	23911609	23911776	+
GWHAAZE00000008	exon	23911903	23911977	+
GWHAAZE00000008	exon	23912249	23912285	+
GWHAAZE00000008	exon	23915610	23917132	+
GWHAAZE00000008	CDS	23905618	23905685	+
GWHAAZE00000008	CDS	23906189	23906357	+
GWHAAZE00000008	CDS	23906573	23906669	+
GWHAAZE00000008	CDS	23907198	23907324	+
GWHAAZE00000008	CDS	23907420	23907535	+
GWHAAZE00000008	CDS	23907716	23907810	+
GWHAAZE00000008	CDS	23907890	23908041	+
GWHAAZE00000008	CDS	23908228	23908285	+
GWHAAZE00000008	CDS	23908373	23908480	+
GWHAAZE00000008	CDS	23908785	23909037	+
GWHAAZE00000008	CDS	23909347	23909528	+
GWHAAZE00000008	CDS	23909853	23909945	+
GWHAAZE00000008	CDS	23910785	23910883	+
GWHAAZE00000008	CDS	23910964	23911095	+
GWHAAZE00000008	CDS	23911175	23911219	+
GWHAAZE00000008	CDS	23911609	23911776	+
GWHAAZE00000008	CDS	23911903	23911977	+
GWHAAZE00000008	CDS	23912249	23912285	+
GWHAAZE00000008	CDS	23915610	23917132	+

Transcript Sequence
>GWHTAAZE027659 ATGCACATGAGTGCCTCCGATTCGCACGGTCGCTCCCTAATTCCCTGGCTATGGTGCTGGTCAAACTTGGTTGCTGCATCAGTAGATGCCGTTTTGCTTTCACATCCAGATACACTTCACCTTGGTGCTTTACCTTATGCCATGAAACAACTTGGACTCTCCGCTCCCGTTTATGCAACAGAACCCGTATTCAGATTGGGCTTGCTGACTATGTACGATCACTATCTCTCAAGGAAGCAAGTATCAGATTTTGATTTGTTTACACTAGATGATATTGATTCTGCTTTCCAAAATGTAACGAGATTGACTTACTCTCAGAATCATCATATGTCTGGCAAAGGAGAAGGAATTGTTATTGCTCCTCATGTAGCTGGTCATCTATTAGGTGGTACAGTTTGGAAGATAACAAAAGATGGTGAAGATGTTATATATGCTGTTGACTTCAACCATCGGAAAGAAAGGCATTTGAACGGAACTGTTTTGGAATCTTTTGTCCGGCCCGCTGTCCTAATAACAGATGCCTATAATGCTTTGAATAATCAGCCTTCTAGACGTCAAAGGGATCAAGAATTTCTTGATGCCATACTAAAGACTCTAAGAGCGGATGGAAATGTATTGCTACCAGTGGATACTGCTGGTCGTATATTGGAGCTGATTTTAATACTGGAACAGTATTGGGCACAACATCATTTAACCTACCCTATCTACTTTCTCACGTATGTTTCATCAAGCACAATTGATTATGTCAAGAGTTTCCTTGAGTGGATGAGCGATTCAATAGCAAAGTCTTTTGAGCACACTCGTGACAATGCTTTTCTTTTGAAGCATGTCACTCTTTTGATCAGTAAGAGTGAGCTAGAAAATGTTCCTGAAGGCCCCAAGATCGTTCTAGCTTCTATGGCCAGTTTAGAGGCTGGGTTCTCACACGATATATTTGTTGAGTGGGCTTCTGATGTAAAAAATTGCGTTCTTTTTACGGAAAGGGGCCAGTTTGCCACACTTGCCCGAATGCTTCAGTCAGATCCACCTCCTAAAGCTGTTAAAGTTACCATGTCGAAGAGAGTTCCTTTAGTTGGGGATGAATTAGCTGCTTATGAAGAAGAGCAAAACCGTAAAAAACAGGAGGAAGCTCTGAAAGCTACTCTTATCAAAGAGGAAGAATCGAAAGCAGTTCTTGGGGCTGAGCTTCCTACGGGTGATCCAATGGTCATTGATTCTACCATTACCCGTGCTTCATCAGATGTTGCTGGCCTGCATGGTGATGCTTACAGGGACATATTAATTGATGGGTTTGTCCCACCTGCATCTAGTATTGCCCCAATGTTCCCCTTCTATGATAACTTCTCTGAATGGGATGATTTTGGTGAAGTCATCAATCCTGATGATTATGTTATCAAGGAAGAAGACATGGACCAATCTATGCCTGCTGGTGGAGATCTTGATGGGAAATTTGACGAAGCCTCTGCTAGTTTGATGCTTGATACAACACCGTCAAAAGTTGTTTCTTCTGAACTTACAGTTCAAGTCAAGTCTTCGTTGAGTTACATGGATTTTGAGGGGCGTTCTGATGGGCGTTCAATTAAATCAATTCTTGCACATGTCGCTCCCTTAAAGCTGGTCTTGGTGCATGGATCGGCTGAAGCCACTGAGCATTTGAAGCAACACTGCTTGAAACATGTTTGCCCCCATGTCTATGCTCCCAAAATTGAAGAAACGATCGATGTTACTTCGGATTTGTGTGCTTATAAGGTGCAACTTTCGGAAAAGCTAATGAGTAATGTGCTCTTTAAGAAGCTTGGAGATTATGAAATAGCGTGGGTTGATTCTGAAGTAGGGAAGACAGAGAATGGCATGTTGTCTTTGCTTCCTCTTTCGACTCCAGCTCCACCACATAAATCTGTACTTGTGGGAGATATTAAAATGGCAGACTTCAAGCAGTTCCTTGCAGGCAAGGGTATCCAGGTAGAATTTTCGGGTGGGGCCTTGCGATGTGGGGAGTACGTAACGCTACGGAAAGTTGGAGATGCAAGTCAGAAGGGTGGTGCTGCTGCCATTCAGCAAATAGTTATTGAAGGCCCGAAGCGCGTACGGTATTACATTTTTATCTACGGGGCTGGGACTCCTGGTGCTGGCGCGACTGACTATTCACGTCACATGCACTCCCTTCCTAGACTGAGATGTCTAGCTCTACTCCAGTCCAAAACCACCACATTATCCATTAATCATCTCAAACAGATTCATGCCCAACTCATCACCAACGCCGTCAAATCTCCCTCCTCTTTCGCTACATTGATCCAACGTTACTGTTCCATGTCATCTCCCCATGCTACTAACTATGCTCACCTAGTTCTAACCCACTTTGCTGTTCCAAATGTTTATCTCCTCAATGTTTTGATCCGATGCACACTATCCACACACTCAATTCATGTTTTTGCCCATTGGGTCTCGAGGGCTGACATCGTTTTCGACGATTACACCTATATTTTTGCTCTTGGAGCCTGCGCTCGATCCTCTACAATTTCGGCTCTATTTGAAGGCAAGCAATTACATGCTCGGATATTAAAACATGGTTCTTTTTCAAACATTATGCTACAGACTACTGCTATTCATTTTTATTCAAGCAATAAGGATGTTGTATCCGCACGGAAGGTGTTTGATGAAATGTATATAAGAAGTAGTGTTACTTGGAATTCTTTGATAGCGGGTTATTGTTCCCAAAGAGAAAGAGTAAATGAACACACTGTTAATGCATTGATGTTGTTTCGAGATATGTTGGTTGATGTTTGCGGAGTAAAACCTACTGAAAGAACCATGGTGTGTGTTCTCTCAGCTGCTTCGCGGTTGGGTGTTTTACAGACTGGTGCTTGTGTTCATGGGTTCATAGAGAAAACAATCAATTCCCCTGAGAATGATGTATTTATTGGCACTGGTCTTGTTGACATGTATTCGAAATGCGGGTGCCTTGATAGTACTTCGTATATTTTTAAGATAATGAAAGAGAAAAATGTCTTGACTTGGACTGCCATGACGACTGGGCTGGCCATTCATGGTAAAGGAAAACAAGCCTTGGAGGTTTTGGATGCTATGAAGGCTAATGGCGTAAAACCCAATGCCGTGACCTTCACTAGTCTATTATCTGCTTGCTGCTACGCCGGGCTTGTTGAAGAAGGCCTTTGTTTGTTCAACCGAATGGAGAGATTCAGAGTAGTGCCTTTAATACAACATTATGGCTGCATTGTTGACCTTCTTGGCCGAATTGGGCATTTAGAAGAGGCTTATGAGTTTATAGTTGGTATGCGGGTTGAAGGCGATGCAGTTTTGTGGAGGAGTTTGTTGAATGCGTGCAAAGTTCATGGGCATGTTGTGATGGGTGAGCGGGTGGCAAAGGTTCTTCTCGGGATACAGAAGGAGGAGAGTTTTGTGTCCATAATTGATGCGGTTGAAGATTACATAGCTTTGTCGAATGTTTATGCTTCTGCAGAAAGGTGGGAGGATGTGGAGATGGTGAGACGGGCAATGAAGGCTAAGGGGATAGAAACTAAACCTGGTTCTAGTTCAGTTCACTCGCTTAACAGCTCTCTCTTGGATGGATTATAG

Network for GWHGAAZE027625

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16661.6	Lactamase_B_6	18	171	4.50E-47
PF10996.9	Beta-Casp	216	338	4.60E-20
PF07521.13	RMMBL	506	556	3.40E-10
PF13299.7	CPSF100_C	619	699	1.60E-10
PF01535.21	PPR	894	906	0.3
PF13041.7	PPR_2	1001	1049	7.90E-12

Protein Sequence

>GWHPAAZE027643
MHMSASDSHGRSLIPWLWCWSNLVAASVDAVLLSHPDTLHLGALPYAMKQLGLSAPVYATEPVFRLGLLTMYDHYLSRKQVSDFDLFTLDDIDSAFQNVTRLTYSQNHHMSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERHLNGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDAILKTLRADGNVLLPVDTAGRILELILILEQYWAQHHLTYPIYFLTYVSSSTIDYVKSFLEWMSDSIAKSFEHTRDNAFLLKHVTLLISKSELENVPEGPKIVLASMASLEAGFSHDIFVEWASDVKNCVLFTERGQFATLARMLQSDPPPKAVKVTMSKRVPLVGDELAAYEEEQNRKKQEEALKATLIKEEESKAVLGAELPTGDPMVIDSTITRASSDVAGLHGDAYRDILIDGFVPPASSIAPMFPFYDNFSEWDDFGEVINPDDYVIKEEDMDQSMPAGGDLDGKFDEASASLMLDTTPSKVVSSELTVQVKSSLSYMDFEGRSDGRSIKSILAHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPKIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDSEVGKTENGMLSLLPLSTPAPPHKSVLVGDIKMADFKQFLAGKGIQVEFSGGALRCGEYVTLRKVGDASQKGGAAAIQQIVIEGPKRVRYYIFIYGAGTPGAGATDYSRHMHSLPRLRCLALLQSKTTTLSINHLKQIHAQLITNAVKSPSSFATLIQRYCSMSSPHATNYAHLVLTHFAVPNVYLLNVLIRCTLSTHSIHVFAHWVSRADIVFDDYTYIFALGACARSSTISALFEGKQLHARILKHGSFSNIMLQTTAIHFYSSNKDVVSARKVFDEMYIRSSVTWNSLIAGYCSQRERVNEHTVNALMLFRDMLVDVCGVKPTERTMVCVLSAASRLGVLQTGACVHGFIEKTINSPENDVFIGTGLVDMYSKCGCLDSTSYIFKIMKEKNVLTWTAMTTGLAIHGKGKQALEVLDAMKANGVKPNAVTFTSLLSACCYAGLVEEGLCLFNRMERFRVVPLIQHYGCIVDLLGRIGHLEEAYEFIVGMRVEGDAVLWRSLLNACKVHGHVVMGERVAKVLLGIQKEESFVSIIDAVEDYIALSNVYASAERWEDVEMVRRAMKAKGIETKPGSSSVHSLNSSLLDGL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14402	CPSF2, CFT2	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.255
	SRR3591706	second leaf	15.199
	SRR3591707	mature leaf	9.766
	SRR3591708	Shoot apex	23.080
	SRR3591709	Stem	13.855
	SRR3591710	White floral bud	11.698
	SRR3591711	White flower	21.002
	SRR3591712	Green floral bud	14.025
	SRR3591713	Yellow flower	17.991
SRP173429	SRR8316895	Juvenile bud stage	8.674
	SRR8316896	Juvenile bud stage	13.338
	SRR8316897	Juvenile bud stage	6.109
	SRR8316894	Third green stage	4.604
	SRR8316900	Third green stage	11.350
	SRR8316901	Third green stage	10.434
	SRR8316898	Complete white stage	3.899
	SRR8316899	Complete white stage	12.710
	SRR8316903	Complete white stage	6.131
	SRR8316902	Silver flowering stage	5.180
	SRR8316904	Silver flowering stage	6.832
	SRR8316905	Silver flowering stage	3.294
	SRR8316906	Gold flowering stage	13.717
	SRR8316907	Gold flowering stage	10.040
	SRR8316908	Gold flowering stage	13.549
SRP132670	SRR6706286	Control	6.210
	SRR6706287	Light intensity 50%	6.962
	SRR6706288	Light intensity 20%	8.289
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.319
	CNS0095593	Slightly white alabastrum(diploid) 2	8.488
	CNS0095594	Slightly white alabastrum(diploid) 3	6.999
	CNS0095595	Whole white alabastrum(diploid) 2	6.754
	CNS0095596	Whole white alabastrum(diploid) 3	6.528
	CNS0095597	Whole white alabastrum(diploid) 4	5.658
	CNS0095598	Silvery flower (diploied) 1	8.646
	CNS0095599	Silvery flower (diploied) 2	6.906
	CNS0095600	Silvery flower (diploied) 3	8.940
	CNS0095601	Golden flower (diploid) 1	7.745
	CNS0095602	Golden flower (diploid) 2	8.502
	CNS0095603	Golden flower (diploid) 3	8.378
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.041
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.868
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.761
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.881
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.734
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.131
	CNS0095610	Silvery flower (tetraploid) 1	11.540
	CNS0095611	Silvery flower (tetraploid) 2	10.341
	CNS0095612	Silvery flower (tetraploid) 3	9.602
	CNS0095613	Golden flower (tetraploid) 1	5.007
	CNS0095614	Golden flower (tetraploid) 2	7.431
	CNS0095615	Golden flower (tetraploid) 3	5.137
CRA001975	CRR073297	Stem 1	10.848
	CRR073298	Stem 2	10.135
	CRR073299	Stem 3	9.582
	CRR073300	Leaf 1	9.537
	CRR073301	Leaf 2	8.618
	CRR073302	Leaf 3	8.788
	CRR073303	Juvenile bud 1	7.743
	CRR073304	Juvenile bud 2	4.861
	CRR073305	Juvenile bud 3	9.023
	CRR073306	Third green 1	2.002
	CRR073307	Third green 2	2.045
	CRR073308	Third green 3	2.125
	CRR073309	Second white 1	5.543
	CRR073310	Second white 2	6.194
	CRR073311	Second white 3	5.138
	CRR073312	Silver flowering 1	3.827
	CRR073313	Silver flowering 2	3.832
	CRR073314	Silver flowering 3	3.109
	CRR073315	Gold flowering 1	6.831
	CRR073316	Gold flowering 2	9.877
	CRR073317	Gold flowering 3	6.034
	CRR073318	Tawny withering 1	8.643
	CRR073319	Tawny withering 2	8.226
	CRR073320	Tawny withering 3	10.033