Detail information of GWHGAAZE027633


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006477360.10PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Citrus sinensis]
COGYP_001938687.11E-38dTDP-4-dehydrorhamnose reductase
Swissprottr|Q9LQ04|RMLCD_ARATH0Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase {ECO:0000305}
trEMBLtr|A0A067FK86|A0A067FK86_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO63611.1}
TAIR10AT1G63000.18E-150nucleotide-rhamnose synthase/epimerase-reductase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2410209024104056-
GWHAAZE00000008mRNA2410209024104056-
GWHAAZE00000008exon2410209024102530-
GWHAAZE00000008exon2410362524104056-
GWHAAZE00000008CDS2410362524104056-
GWHAAZE00000008CDS2410209024102530-
Transcript Sequence

Network for GWHGAAZE027633

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04321.18RmlD_sub_bind81801.30E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12451UER1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Amino sugar and nucleotide sugar metabolismmap00520
Polyketide sugar unit biosynthesismap00523

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.147
SRR3591707mature leaf0.117
SRR3591708Shoot apex0.000
SRR3591709Stem2.847
SRR3591710White floral bud1.824
SRR3591711White flower0.310
SRR3591712Green floral bud44.180
SRR3591713Yellow flower0.125
SRP173429 SRR8316895Juvenile bud stage 1.194
SRR8316896Juvenile bud stage 13.427
SRR8316897Juvenile bud stage 7.460
SRR8316894Third green stage 10.339
SRR8316900Third green stage 54.030
SRR8316901Third green stage 56.501
SRR8316898Complete white stage 0.660
SRR8316899Complete white stage 2.760
SRR8316903Complete white stage 1.076
SRR8316902Silver flowering stage0.979
SRR8316904Silver flowering stage0.576
SRR8316905Silver flowering stage0.525
SRR8316906Gold flowering stage 1.613
SRR8316907Gold flowering stage 1.099
SRR8316908Gold flowering stage 0.668
SRP132670SRR6706286Control11.801
SRR6706287Light intensity 50%10.759
SRR6706288Light intensity 20%11.601
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.247
CNS0095593Slightly white alabastrum(diploid) 222.618
CNS0095594Slightly white alabastrum(diploid) 329.731
CNS0095595Whole white alabastrum(diploid) 234.002
CNS0095596Whole white alabastrum(diploid) 352.562
CNS0095597Whole white alabastrum(diploid) 438.909
CNS0095598Silvery flower (diploied) 10.343
CNS0095599Silvery flower (diploied) 20.919
CNS0095600Silvery flower (diploied) 31.078
CNS0095601Golden flower (diploid) 10.315
CNS0095602Golden flower (diploid) 21.785
CNS0095603Golden flower (diploid) 31.390
CNS0095604Slightly white alabastrum(tetraploid) 162.933
CNS0095605Slightly white alabastrum(tetraploid) 260.651
CNS0095606Slightly white alabastrum(tetraploid) 30.058
CNS0095607Whole white alabastrum(tetraploid) 183.765
CNS0095608Whole white alabastrum(tetraploid) 289.824
CNS0095609Whole white alabastrum(tetraploid) 354.115
CNS0095610Silvery flower (tetraploid) 10.609
CNS0095611Silvery flower (tetraploid) 20.090
CNS0095612Silvery flower (tetraploid) 30.484
CNS0095613Golden flower (tetraploid) 10.001
CNS0095614Golden flower (tetraploid) 20.106
CNS0095615Golden flower (tetraploid) 30.200
CRA001975CRR073297Stem 13.521
CRR073298Stem 26.191
CRR073299Stem 33.298
CRR073300Leaf 113.341
CRR073301Leaf 214.161
CRR073302Leaf 314.533
CRR073303Juvenile bud 110.675
CRR073304Juvenile bud 210.177
CRR073305Juvenile bud 32.639
CRR073306Third green 10.881
CRR073307Third green 20.405
CRR073308Third green 31.637
CRR073309Second white 11.070
CRR073310Second white 20.614
CRR073311Second white 30.423
CRR073312Silver flowering 10.781
CRR073313Silver flowering 22.369
CRR073314Silver flowering 30.627
CRR073315Gold flowering 11.529
CRR073316Gold flowering 22.402
CRR073317Gold flowering 30.555
CRR073318Tawny withering 11.665
CRR073319Tawny withering 20.441
CRR073320Tawny withering 30.967