Gene detail

Detail information of GWHGAAZE027634

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007158449.1	1.9548E-173	hypothetical protein PHAVU_002G153300g [Phaseolus vulgaris]
Swissprot	tr\|Q9FPQ8\|KNAT7_ARATH	7E-157	Homeobox protein knotted-1-like 7
trEMBL	tr\|V7CM51\|V7CM51_PHAVU	7E-174	Uncharacterized protein {ECO:0000313\|EMBL:ESW30443.1}
TAIR10	AT1G62990.1	4E-117	KNOTTED-like homeobox of Arabidopsis thaliana 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	24107170	24116211	-
GWHAAZE00000008	mRNA	24107170	24116211	-
GWHAAZE00000008	exon	24115930	24116211	-
GWHAAZE00000008	exon	24114593	24114713	-
GWHAAZE00000008	exon	24109444	24109646	-
GWHAAZE00000008	exon	24108716	24108847	-
GWHAAZE00000008	exon	24107170	24107310	-
GWHAAZE00000008	CDS	24115930	24116211	-
GWHAAZE00000008	CDS	24114593	24114713	-
GWHAAZE00000008	CDS	24109444	24109646	-
GWHAAZE00000008	CDS	24108716	24108847	-
GWHAAZE00000008	CDS	24107170	24107310	-

Transcript Sequence
>GWHTAAZE027668 ATGATGGGTACTAGCAGCGGAGGAGGAATAGGTGGTTTGATGGAAGTTTCCGGTGACCACCACCGGCAACTGAAGGCGGAGATAGCCAACCACCCGCTGTACGAGCAACTACTGGCGTCGCACGTCGCGTGCCTGCGTGTCGCGACGCCGATAGATCAGTTGCCACTAATTGATGCGCAGTTATCACAATCTCATCATTTGATTCGCTCTTATGCATCAATTCATCAACACAATAACCCCCCTCTCTCTCCTCATGAGAGACAAGAGCTTGATAATTTTCTGGCACAGTACTTGTTAGTTTTGTGTTCTTTAAAGGAACAACTGCAGCAACATGTCAGAGTCCATGCTGTTGAAGCTGTCATGGCTTGCCGTGAAATTGAACAGACCCTACAATCTCTCACTGGAGTAAGTCTAGGGGAAGGAACAGGGGCAACAATGTCAGATGATGAGGAAGAGATGATGATGCAAATGGATTACTCATTGGAAAATGATCAAAGTGGGAATAATAATGATATGATGATGGGATTTGGCCCCCTTCTTCCCACTGAATCTGAAAGGTCTCTTATGGAAAGAGTCCGCCAAGAACTTAAGATTGAGCTCAAACAGGGATTTAGGTCAAAGATTGAAGATGTGAGGGAGGAGATATTGAGAAAAAGAAGGGCAGGGAAATTACCAGGTGACACCACTTCTGTGCTCAAGGATTGGTGGCAGCAACACTCCAAGTGGCCTTACCCTACTGAAGATGATAAAGCAAAGCTAGTGGAGGAAACAGGATTACAGCTAAAGCAAATAAACAATTGGTTCATTAACCAAAGGAAACGAAATTGGCACAGCAACTCCAACTCCATGGCTTCTCTCAAATCCAAGCGCAAAAGATAA

Network for GWHGAAZE027634

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03790.14	KNOX1	24	65	5.10E-18
PF03791.14	KNOX2	83	134	1.20E-17
PF05920.12	Homeobox_KN	235	274	1.50E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-KNOX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.882
	SRR3591706	second leaf	34.707
	SRR3591707	mature leaf	66.401
	SRR3591708	Shoot apex	32.113
	SRR3591709	Stem	104.200
	SRR3591710	White floral bud	88.907
	SRR3591711	White flower	115.456
	SRR3591712	Green floral bud	37.452
	SRR3591713	Yellow flower	194.613
SRP173429	SRR8316895	Juvenile bud stage	25.673
	SRR8316896	Juvenile bud stage	31.475
	SRR8316897	Juvenile bud stage	14.418
	SRR8316894	Third green stage	9.988
	SRR8316900	Third green stage	35.147
	SRR8316901	Third green stage	32.849
	SRR8316898	Complete white stage	38.286
	SRR8316899	Complete white stage	38.118
	SRR8316903	Complete white stage	53.682
	SRR8316902	Silver flowering stage	80.008
	SRR8316904	Silver flowering stage	100.689
	SRR8316905	Silver flowering stage	63.857
	SRR8316906	Gold flowering stage	267.794
	SRR8316907	Gold flowering stage	290.390
	SRR8316908	Gold flowering stage	270.016
SRP132670	SRR6706286	Control	47.285
	SRR6706287	Light intensity 50%	46.300
	SRR6706288	Light intensity 20%	44.554
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.062
	CNS0095593	Slightly white alabastrum(diploid) 2	25.343
	CNS0095594	Slightly white alabastrum(diploid) 3	36.133
	CNS0095595	Whole white alabastrum(diploid) 2	26.271
	CNS0095596	Whole white alabastrum(diploid) 3	25.605
	CNS0095597	Whole white alabastrum(diploid) 4	25.367
	CNS0095598	Silvery flower (diploied) 1	74.232
	CNS0095599	Silvery flower (diploied) 2	68.965
	CNS0095600	Silvery flower (diploied) 3	80.761
	CNS0095601	Golden flower (diploid) 1	69.643
	CNS0095602	Golden flower (diploid) 2	87.909
	CNS0095603	Golden flower (diploid) 3	92.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.823
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.750
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.553
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.864
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.267
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.575
	CNS0095610	Silvery flower (tetraploid) 1	92.134
	CNS0095611	Silvery flower (tetraploid) 2	70.666
	CNS0095612	Silvery flower (tetraploid) 3	128.197
	CNS0095613	Golden flower (tetraploid) 1	137.937
	CNS0095614	Golden flower (tetraploid) 2	102.305
	CNS0095615	Golden flower (tetraploid) 3	162.249
CRA001975	CRR073297	Stem 1	53.594
	CRR073298	Stem 2	35.075
	CRR073299	Stem 3	40.374
	CRR073300	Leaf 1	35.437
	CRR073301	Leaf 2	37.488
	CRR073302	Leaf 3	31.094
	CRR073303	Juvenile bud 1	24.217
	CRR073304	Juvenile bud 2	32.315
	CRR073305	Juvenile bud 3	24.504
	CRR073306	Third green 1	230.112
	CRR073307	Third green 2	180.240
	CRR073308	Third green 3	191.933
	CRR073309	Second white 1	214.020
	CRR073310	Second white 2	409.853
	CRR073311	Second white 3	410.665
	CRR073312	Silver flowering 1	363.686
	CRR073313	Silver flowering 2	245.064
	CRR073314	Silver flowering 3	351.580
	CRR073315	Gold flowering 1	48.337
	CRR073316	Gold flowering 2	54.112
	CRR073317	Gold flowering 3	17.188
	CRR073318	Tawny withering 1	40.375
	CRR073319	Tawny withering 2	29.475
	CRR073320	Tawny withering 3	58.966