Gene detail

Detail information of GWHGAAZE027701

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010259013.1	5.53171E-88	PREDICTED: uncharacterized protein LOC104598572 [Nelumbo nucifera]
trEMBL	tr\|F6HP95\|F6HP95_VITVI	1E-86	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56501.1}
TAIR10	AT3G60670.1	9E-58	PLATZ transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	25795542	25799410	-
GWHAAZE00000008	mRNA	25795542	25799410	-
GWHAAZE00000008	exon	25799234	25799410	-
GWHAAZE00000008	exon	25798845	25798919	-
GWHAAZE00000008	exon	25797976	25798116	-
GWHAAZE00000008	exon	25795542	25795971	-
GWHAAZE00000008	CDS	25799234	25799410	-
GWHAAZE00000008	CDS	25798845	25798919	-
GWHAAZE00000008	CDS	25797976	25798116	-
GWHAAZE00000008	CDS	25795642	25795971	-
GWHAAZE00000008	three_prime_UTR	25795542	25795641	-

Transcript Sequence
>GWHTAAZE027735 ATGGGCGTGAATTCAATTCCTCGGTGGGTTGAGGTTCTTTTGGGTCAAAAGTTTTTCAACTCATGTATACTTCATCAGGATGAAAAGAAAAATGAAGAGAATACATTTTGTTTGGACTGTTGCATTTCTTTATGTCCCCATTGTTTGGCTCCTCACAGAACCCACAATCTCTTACAGATAAGAAGGTATGTTTATCAAGATGTGTTAAGGTTGAAAGATGCTGAGAAGTTAATGGACTGTTCATCAGTTCAATCATACACAACCAACAGTGCAAAAGTGGTGTTTTTGAACCAAAGGCCGTTGACAAGACAATTCAAAGGCTGTCGTAGCCTTTGCATATTATGCCACCGCAATCTCCAAGACCCTTTTCTCTTTTGCTCTATCTCTTGCAAGGTTAATTACATGGTGAGCTCCAAAAACAGCTTGAAGGATCAATATTTCTTCAAATATGGTGGAGGTTTAATAGAATTGGAAAGTACCCAAATGTCACCAGACACGGTGCTCGACGAAATGCCCCAAAGAACTTCCTCTGCTTCAACATCAATGGGTCCTAATCCCCTTGACTGCAGAGCCCTTTTATGCACTGCAACCACTGATTTTGTGAGGAAGAAGAGAACTCCTGTCGTCGTTCACCGCACCCGCCCTCCGTGCTTGCCTCCGGCTGAAGTTTCCGTTTGTTCGAGCCGCAGGAAGGGTGTGCCTCACCGGTCTCCGATGTATTAGGCGCTCTGTTTTTATAAGATGTTGACGGGCAGGGTTTTTGACGTTTTGTCCAGAAGGGTTGTATATTGTCAAAGTTCAAATTTGCATAGTGTTAATTTTG

Network for GWHGAAZE027701

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04640.15	PLATZ	61	132	8.50E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PLATZ

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.523
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.100
	SRR3591708	Shoot apex	3.242
	SRR3591709	Stem	0.538
	SRR3591710	White floral bud	0.882
	SRR3591711	White flower	0.810
	SRR3591712	Green floral bud	0.343
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.935
	SRR8316896	Juvenile bud stage	0.395
	SRR8316897	Juvenile bud stage	0.220
	SRR8316894	Third green stage	0.732
	SRR8316900	Third green stage	0.689
	SRR8316901	Third green stage	0.559
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.767
	SRR8316903	Complete white stage	0.679
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.071
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.320
	SRR6706287	Light intensity 50%	0.135
	SRR6706288	Light intensity 20%	0.192
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.322
	CNS0095593	Slightly white alabastrum(diploid) 2	0.797
	CNS0095594	Slightly white alabastrum(diploid) 3	0.646
	CNS0095595	Whole white alabastrum(diploid) 2	0.688
	CNS0095596	Whole white alabastrum(diploid) 3	0.373
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	2.375
	CNS0095599	Silvery flower (diploied) 2	0.998
	CNS0095600	Silvery flower (diploied) 3	0.524
	CNS0095601	Golden flower (diploid) 1	2.914
	CNS0095602	Golden flower (diploid) 2	1.249
	CNS0095603	Golden flower (diploid) 3	1.006
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.642
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.531
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.151
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.802
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.127
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.235
	CNS0095610	Silvery flower (tetraploid) 1	0.167
	CNS0095611	Silvery flower (tetraploid) 2	0.419
	CNS0095612	Silvery flower (tetraploid) 3	0.329
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.369
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.569
	CRR073298	Stem 2	3.958
	CRR073299	Stem 3	1.766
	CRR073300	Leaf 1	1.172
	CRR073301	Leaf 2	2.219
	CRR073302	Leaf 3	0.190
	CRR073303	Juvenile bud 1	0.137
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.294
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.544
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.178
	CRR073314	Silver flowering 3	0.142
	CRR073315	Gold flowering 1	1.055
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.900
	CRR073319	Tawny withering 2	0.457
	CRR073320	Tawny withering 3	1.865