Gene detail

Detail information of GWHGAAZE027704

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011018283.1	3.6264E-118	PREDICTED: adenine phosphoribosyltransferase 3 isoform X2 [Populus euphratica]
COG	NP_439386.1	8E-58	adenine phosphoribosyltransferase
Swissprot	tr\|Q9SUW2\|APT3_ARATH	8E-103	Adenine phosphoribosyltransferase 3
trEMBL	tr\|B9N3Q8\|B9N3Q8_POPTR	8E-118	MtN30 family protein {ECO:0000313\|EMBL:ERP64753.1}
TAIR10	AT4G22570.1	2E-81	adenine phosphoribosyl transferase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	25867011	25873726	+
GWHAAZE00000008	mRNA	25867011	25873726	+
GWHAAZE00000008	exon	25867011	25867092	+
GWHAAZE00000008	exon	25867690	25867800	+
GWHAAZE00000008	exon	25871652	25871744	+
GWHAAZE00000008	exon	25872187	25872336	+
GWHAAZE00000008	exon	25872432	25872490	+
GWHAAZE00000008	exon	25873337	25873726	+
GWHAAZE00000008	CDS	25867011	25867092	+
GWHAAZE00000008	CDS	25867690	25867800	+
GWHAAZE00000008	CDS	25871652	25871744	+
GWHAAZE00000008	CDS	25872187	25872336	+
GWHAAZE00000008	CDS	25872432	25872490	+
GWHAAZE00000008	CDS	25873337	25873390	+
GWHAAZE00000008	three_prime_UTR	25873391	25873726	+

Transcript Sequence
>GWHTAAZE027738 ATGGCGGTATCCCGTGACGATGATCCTCGTATCAATGGCATCAAATCTCAAATTCGTGTTGTCCCTAACTTCCCCAAACCTGGGATTATGTTTCAAGATATAACCACACTGTTGCTAAATCCAAAGGCTTTTAAAGATACTGTGGATTTGTTCGTGGAGCGATACAAAGGCAAAAACATTTCTGTAGTTGCAGGAATAGAGGCTCGAGGTTTTATATTCGGTCCACCCATTGCATTGGCAATAGGAGCAAAGTTTGTCCCCTTGAGAAAACCTAAGAAGTTGCCTGGAGAAGTTATATCAGAAGAGTATATTTTGGAATATGGAAGGGATTGTCTGGAGATGCACGTTGGAGCTGTTCAATCAGGTGAACGAGCTTTAGTGGTGGATGATTTGATTGCTACTGGTGGCACCCTTTGCGCGGCCATGAATTTACTTGAACGAGCTGGAGCTGAAGTTGTTGAATGCGCATGCTTGATTGAATTACCAGATTTACAGGGGCGTGGGCGATTGAACGGAAAGCCTTTGTACGTTCTCGTGGAGTCCCGTTAGTACTGCTGCATGACGAAGTGTACATTAGAGAAGGCCATTTCTTAAGCCAAATGCCTTGTTGAGAATGGTCTTCTTCCATTTTTCTCTTTCCCACTCTTCTATGAGTGCATGCTTCTATATGAGCCCCTTTAGACCTTTCATTACCAGTGTAGAAACATTGAATTAATGCGAAGAAATTGGTCGAGGAGACGCTTATAGGTTTTCTCATCTTCTCAACTTTAGGGAAATTTTTAGTGGATTAGAAAAGCATGAAAAAAGTCCTTTTTATGGCGTGTTAATGATTTTATGTTAGTTTTTTGAACTTTCATATGAACCCTATTTAGGGTGTTCTTTGAA

Network for GWHGAAZE027704

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00156.28	Pribosyltran	52	163	1.20E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00759	APRT, apt	Metabolic pathways	map01100
K00759	APRT, apt	Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0009116	biological_process	nucleoside metabolic process
GO:0006168	biological_process	adenine salvage
GO:0005737	cellular_component	cytoplasm
GO:0003999	molecular_function	adenine phosphoribosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.876
	SRR3591706	second leaf	2.266
	SRR3591707	mature leaf	0.348
	SRR3591708	Shoot apex	7.839
	SRR3591709	Stem	26.651
	SRR3591710	White floral bud	1.004
	SRR3591711	White flower	0.581
	SRR3591712	Green floral bud	1.408
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.036
	SRR8316896	Juvenile bud stage	12.011
	SRR8316897	Juvenile bud stage	5.772
	SRR8316894	Third green stage	3.003
	SRR8316900	Third green stage	3.077
	SRR8316901	Third green stage	4.854
	SRR8316898	Complete white stage	0.185
	SRR8316899	Complete white stage	2.674
	SRR8316903	Complete white stage	0.872
	SRR8316902	Silver flowering stage	1.263
	SRR8316904	Silver flowering stage	1.051
	SRR8316905	Silver flowering stage	0.389
	SRR8316906	Gold flowering stage	1.052
	SRR8316907	Gold flowering stage	1.006
	SRR8316908	Gold flowering stage	1.757
SRP132670	SRR6706286	Control	0.834
	SRR6706287	Light intensity 50%	0.846
	SRR6706288	Light intensity 20%	0.471
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.617
	CNS0095593	Slightly white alabastrum(diploid) 2	7.209
	CNS0095594	Slightly white alabastrum(diploid) 3	14.233
	CNS0095595	Whole white alabastrum(diploid) 2	4.478
	CNS0095596	Whole white alabastrum(diploid) 3	2.990
	CNS0095597	Whole white alabastrum(diploid) 4	2.886
	CNS0095598	Silvery flower (diploied) 1	3.117
	CNS0095599	Silvery flower (diploied) 2	3.522
	CNS0095600	Silvery flower (diploied) 3	2.486
	CNS0095601	Golden flower (diploid) 1	1.597
	CNS0095602	Golden flower (diploid) 2	1.119
	CNS0095603	Golden flower (diploid) 3	1.624
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.258
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.899
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.217
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.766
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.072
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.182
	CNS0095610	Silvery flower (tetraploid) 1	0.066
	CNS0095611	Silvery flower (tetraploid) 2	0.602
	CNS0095612	Silvery flower (tetraploid) 3	0.306
	CNS0095613	Golden flower (tetraploid) 1	0.057
	CNS0095614	Golden flower (tetraploid) 2	0.070
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	4.493
	CRR073298	Stem 2	4.111
	CRR073299	Stem 3	3.017
	CRR073300	Leaf 1	0.744
	CRR073301	Leaf 2	1.134
	CRR073302	Leaf 3	1.725
	CRR073303	Juvenile bud 1	1.190
	CRR073304	Juvenile bud 2	0.056
	CRR073305	Juvenile bud 3	0.496
	CRR073306	Third green 1	2.679
	CRR073307	Third green 2	1.369
	CRR073308	Third green 3	1.907
	CRR073309	Second white 1	1.816
	CRR073310	Second white 2	1.611
	CRR073311	Second white 3	1.934
	CRR073312	Silver flowering 1	0.843
	CRR073313	Silver flowering 2	0.543
	CRR073314	Silver flowering 3	1.202
	CRR073315	Gold flowering 1	4.745
	CRR073316	Gold flowering 2	4.954
	CRR073317	Gold flowering 3	3.417
	CRR073318	Tawny withering 1	7.247
	CRR073319	Tawny withering 2	9.533
	CRR073320	Tawny withering 3	8.590