Detail information of GWHGAAZE027739


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002306388.22.9143E-165hypothetical protein POPTR_0005s09660g [Populus trichocarpa]
COGYP_005032303.11E-734-hydroxybenzoate-octaprenyl transferase
Swissprottr|Q93YP7|4HPT_ARATH2E-1294-hydroxybenzoate polyprenyltransferase, mitochondrial (Precursor)
trEMBLtr|B9H5T2|B9H5T2_POPTR1E-165Uncharacterized protein {ECO:0000313|EMBL:EEE93384.2}
TAIR10AT4G23660.22E-103polyprenyltransferase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2641968526425121-
GWHAAZE00000008mRNA2641968526425121-
GWHAAZE00000008exon2641968526419754-
GWHAAZE00000008exon2642006026420156-
GWHAAZE00000008exon2642024726420382-
GWHAAZE00000008exon2642133526421662-
GWHAAZE00000008exon2642225126422372-
GWHAAZE00000008exon2642358426423752-
GWHAAZE00000008exon2642481126425121-
GWHAAZE00000008CDS2642481126425121-
GWHAAZE00000008CDS2642358426423752-
GWHAAZE00000008CDS2642225126422372-
GWHAAZE00000008CDS2642133526421662-
GWHAAZE00000008CDS2642024726420382-
GWHAAZE00000008CDS2642006026420156-
GWHAAZE00000008CDS2641968526419754-
Transcript Sequence

Network for GWHGAAZE027739

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01040.19UbiA992091.50E-23
PF01040.19UbiA2573891.70E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06125COQ2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane
GO:0004659molecular_functionprenyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.042
SRR3591706second leaf10.423
SRR3591707mature leaf11.890
SRR3591708Shoot apex15.505
SRR3591709Stem19.802
SRR3591710White floral bud17.756
SRR3591711White flower25.286
SRR3591712Green floral bud13.944
SRR3591713Yellow flower22.280
SRP173429 SRR8316895Juvenile bud stage 16.378
SRR8316896Juvenile bud stage 20.047
SRR8316897Juvenile bud stage 8.258
SRR8316894Third green stage 8.912
SRR8316900Third green stage 29.768
SRR8316901Third green stage 26.507
SRR8316898Complete white stage 10.624
SRR8316899Complete white stage 25.719
SRR8316903Complete white stage 21.736
SRR8316902Silver flowering stage16.683
SRR8316904Silver flowering stage27.494
SRR8316905Silver flowering stage11.647
SRR8316906Gold flowering stage 44.483
SRR8316907Gold flowering stage 45.587
SRR8316908Gold flowering stage 41.752
SRP132670SRR6706286Control9.000
SRR6706287Light intensity 50%10.719
SRR6706288Light intensity 20%10.642
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.132
CNS0095593Slightly white alabastrum(diploid) 212.221
CNS0095594Slightly white alabastrum(diploid) 316.074
CNS0095595Whole white alabastrum(diploid) 214.502
CNS0095596Whole white alabastrum(diploid) 313.092
CNS0095597Whole white alabastrum(diploid) 411.640
CNS0095598Silvery flower (diploied) 122.193
CNS0095599Silvery flower (diploied) 214.583
CNS0095600Silvery flower (diploied) 328.933
CNS0095601Golden flower (diploid) 115.075
CNS0095602Golden flower (diploid) 222.266
CNS0095603Golden flower (diploid) 319.949
CNS0095604Slightly white alabastrum(tetraploid) 113.771
CNS0095605Slightly white alabastrum(tetraploid) 213.599
CNS0095606Slightly white alabastrum(tetraploid) 316.896
CNS0095607Whole white alabastrum(tetraploid) 16.475
CNS0095608Whole white alabastrum(tetraploid) 25.868
CNS0095609Whole white alabastrum(tetraploid) 313.778
CNS0095610Silvery flower (tetraploid) 126.189
CNS0095611Silvery flower (tetraploid) 216.289
CNS0095612Silvery flower (tetraploid) 323.252
CNS0095613Golden flower (tetraploid) 111.866
CNS0095614Golden flower (tetraploid) 218.914
CNS0095615Golden flower (tetraploid) 314.892
CRA001975CRR073297Stem 116.850
CRR073298Stem 213.081
CRR073299Stem 38.577
CRR073300Leaf 116.652
CRR073301Leaf 215.539
CRR073302Leaf 38.659
CRR073303Juvenile bud 18.900
CRR073304Juvenile bud 27.795
CRR073305Juvenile bud 312.451
CRR073306Third green 19.437
CRR073307Third green 29.397
CRR073308Third green 310.384
CRR073309Second white 114.110
CRR073310Second white 215.922
CRR073311Second white 315.467
CRR073312Silver flowering 111.098
CRR073313Silver flowering 28.857
CRR073314Silver flowering 310.757
CRR073315Gold flowering 14.410
CRR073316Gold flowering 26.344
CRR073317Gold flowering 32.688
CRR073318Tawny withering 112.797
CRR073319Tawny withering 211.764
CRR073320Tawny withering 314.447