Detail information of GWHGAAZE027753


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10005.11.79469E-21unnamed protein product [Coffea canephora]
Swissprottr|A5Y7H8|HAT4_ARATH7E-10Homeobox-leucine zipper protein HAT4
trEMBLtr|A0A068UN80|A0A068UN80_COFCA7E-22Coffea canephora DH200=94 genomic scaffold, scaffold_41 {ECO:0000313|EMBL:CDP10005.1}
TAIR10AT4G16780.10.00000001homeobox protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene2700101427001737+
GWHAAZE00000008mRNA2700101427001737+
GWHAAZE00000008exon2700101427001179+
GWHAAZE00000008exon2700160127001737+
GWHAAZE00000008CDS2700101427001179+
GWHAAZE00000008CDS2700160127001737+
Transcript Sequence

Network for GWHGAAZE027753

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0144


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04618.13HD-ZIP_N2841.00E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.747
SRR3591706second leaf78.325
SRR3591707mature leaf39.485
SRR3591708Shoot apex47.926
SRR3591709Stem32.880
SRR3591710White floral bud46.741
SRR3591711White flower29.492
SRR3591712Green floral bud57.249
SRR3591713Yellow flower19.955
SRP173429 SRR8316895Juvenile bud stage 26.502
SRR8316896Juvenile bud stage 63.402
SRR8316897Juvenile bud stage 28.677
SRR8316894Third green stage 34.085
SRR8316900Third green stage 71.666
SRR8316901Third green stage 75.526
SRR8316898Complete white stage 42.974
SRR8316899Complete white stage 76.559
SRR8316903Complete white stage 71.222
SRR8316902Silver flowering stage30.034
SRR8316904Silver flowering stage21.254
SRR8316905Silver flowering stage13.097
SRR8316906Gold flowering stage 19.564
SRR8316907Gold flowering stage 19.618
SRR8316908Gold flowering stage 18.315
SRP132670SRR6706286Control84.178
SRR6706287Light intensity 50%99.841
SRR6706288Light intensity 20%98.643
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.813
CNS0095593Slightly white alabastrum(diploid) 226.591
CNS0095594Slightly white alabastrum(diploid) 316.831
CNS0095595Whole white alabastrum(diploid) 228.802
CNS0095596Whole white alabastrum(diploid) 326.881
CNS0095597Whole white alabastrum(diploid) 432.178
CNS0095598Silvery flower (diploied) 15.293
CNS0095599Silvery flower (diploied) 28.383
CNS0095600Silvery flower (diploied) 324.072
CNS0095601Golden flower (diploid) 14.342
CNS0095602Golden flower (diploid) 211.611
CNS0095603Golden flower (diploid) 38.337
CNS0095604Slightly white alabastrum(tetraploid) 143.004
CNS0095605Slightly white alabastrum(tetraploid) 235.081
CNS0095606Slightly white alabastrum(tetraploid) 3106.780
CNS0095607Whole white alabastrum(tetraploid) 122.215
CNS0095608Whole white alabastrum(tetraploid) 220.650
CNS0095609Whole white alabastrum(tetraploid) 353.705
CNS0095610Silvery flower (tetraploid) 112.798
CNS0095611Silvery flower (tetraploid) 214.622
CNS0095612Silvery flower (tetraploid) 324.624
CNS0095613Golden flower (tetraploid) 115.345
CNS0095614Golden flower (tetraploid) 211.270
CNS0095615Golden flower (tetraploid) 316.303
CRA001975CRR073297Stem 1100.118
CRR073298Stem 2102.837
CRR073299Stem 3112.570
CRR073300Leaf 1107.606
CRR073301Leaf 2107.043
CRR073302Leaf 3113.984
CRR073303Juvenile bud 1101.335
CRR073304Juvenile bud 251.033
CRR073305Juvenile bud 3123.696
CRR073306Third green 154.954
CRR073307Third green 2104.647
CRR073308Third green 370.142
CRR073309Second white 112.435
CRR073310Second white 218.884
CRR073311Second white 39.883
CRR073312Silver flowering 19.887
CRR073313Silver flowering 28.602
CRR073314Silver flowering 38.533
CRR073315Gold flowering 115.734
CRR073316Gold flowering 217.287
CRR073317Gold flowering 316.636
CRR073318Tawny withering 130.632
CRR073319Tawny withering 211.469
CRR073320Tawny withering 326.618